Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g017950 Solanum pennellii HOM05D004621 ORTHO05D005817 4.5e-112 407.9 200 100.0
PGSC0003DMG400008208 Solanum tuberosum HOM05D004621 ORTHO05D005817 1.7e-55 219.9 124 88.7
Solyc08g062560.4 Solanum lycopersicum HOM05D004621 ORTHO05D005817 3.8e-55 218.8 124 87.1
Sopen08g017990 Solanum pennellii HOM05D004621 ORTHO05D005817 3.8e-55 218.8 124 87.1
CAN.G42.5 Capsicum annuum HOM05D004621 ORTHO05D005817 4.7e-53 211.8 124 85.5
Nitab4.5_0009148g0020 Nicotiana tabacum HOM05D004621 ORTHO05D005817 1.4e-52 210.3 245 51.4
Peaxi162Scf01253g00025 Petunia axillaris HOM05D004621 ORTHO05D005817 1.1e-49 200.7 245 50.6
Nitab4.5_0000286g0110 Nicotiana tabacum HOM05D004621 ORTHO05D005817 7.0e-49 198.0 245 50.2
Migut.A00101 Erythranthe guttata HOM05D004621 ORTHO05D005817 4.7e-45 185.3 123 73.2
GSVIVG01035427001 Vitis vinifera HOM05D004621 ORTHO05D005817 4.0e-44 182.2 138 64.5
Nn6g35569 Nelumbo nucifera HOM05D004621 ORTHO05D005817 5.2e-44 181.8 123 73.2
HanXRQChr10g0309801 Helianthus annuus HOM05D004621 ORTHO05D005817 6.8e-44 181.4 123 71.5
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 1.2e-43 180.6 138 63.8
SGA_v2.0_scaffold20G09183 Striga asiatica HOM05D004621 ORTHO05D005817 1.5e-43 180.3 123 73.2
Ciclev10010180m.g Citrus clementina HOM05D004621 ORTHO05D005817 2.0e-43 179.9 123 69.9
Lsat_1_v5_gn_5_78680 Lactuca sativa HOM05D004621 ORTHO05D005817 3.4e-43 179.1 123 71.5
Lj8A491T35 Lonicera japonica HOM05D004621 ORTHO05D005817 3.4e-43 179.1 123 71.5
CANSAT21G1762 Cannabis sativa HOM05D004621 ORTHO05D005817 4.4e-43 178.7 139 66.2
PSO210G2988 Papaver somniferum HOM05D004621 ORTHO05D005817 5.7e-43 178.3 123 70.7
MD15G1053900 Malus domestica HOM05D004621 ORTHO05D005817 7.5e-43 177.9 123 67.5
Sed0025089 Sechium edule HOM05D004621 ORTHO05D005817 7.5e-43 177.9 139 64.0
Dinv12465 Davidia involucrata HOM05D004621 ORTHO05D005817 9.8e-43 177.6 123 70.7
PSO210G1875 Papaver somniferum HOM05D004621 ORTHO05D005817 9.8e-43 177.6 123 69.9
RcHm_v2.0_Chr6g0311441 Rosa chinensis HOM05D004621 ORTHO05D005817 9.8e-43 177.6 123 69.9
Ca_15845_v3 Cicer arietinum L. HOM05D004621 ORTHO05D005817 1.7e-42 176.8 123 67.5
Glyma.04G054300 Glycine max HOM05D004621 ORTHO05D005817 2.2e-42 176.4 123 68.3
QL02p000390 Quercus lobata HOM05D004621 ORTHO05D005817 2.8e-42 176.0 123 69.9
THA.LOC104811228 Tarenaya hassleriana HOM05D004621 ORTHO05D005817 2.8e-42 176.0 123 66.7
TPR.G3533 Trifolium pratense HOM05D004621 ORTHO05D005817 2.8e-42 176.0 123 68.3
AUR62020569 Chenopodium quinoa HOM05D004621 ORTHO05D005817 3.7e-42 175.6 139 64.7
AUR62009103 Chenopodium quinoa HOM05D004621 ORTHO05D005817 4.9e-42 175.3 139 64.7
Gohir.D05G041600 Gossypium hirsutum HOM05D004621 ORTHO05D005817 4.9e-42 175.3 123 68.3
Gorai.009G042200 Gossypium raimondii HOM05D004621 ORTHO05D005817 4.9e-42 175.3 123 68.3
Prupe.1G407400 Prunus persica HOM05D004621 ORTHO05D005817 4.9e-42 175.3 123 66.7
Manes.16G083500 Manihot esculenta HOM05D004621 ORTHO05D005817 6.3e-42 174.9 123 67.5
SalBow4G1696 Salvia bowleyana HOM05D004621 ORTHO05D005817 6.3e-42 174.9 123 69.9
Glyma.06G054600 Glycine max HOM05D004621 ORTHO05D005817 8.3e-42 174.5 123 67.5
Psat5g035360 Pisum sativum HOM05D004621 ORTHO05D005817 8.3e-42 174.5 123 66.7
Gohir.A05G040100 Gossypium hirsutum HOM05D004621 ORTHO05D005817 1.1e-41 174.1 123 68.3
Lalb_Chr11g0063251 Lupinus albus HOM05D004621 ORTHO05D005817 1.4e-41 173.7 123 67.5
Phvul.009G080100 Phaseolus vulgaris HOM05D004621 ORTHO05D005817 2.4e-41 172.9 123 67.5
COL.COLO4_21108 Corchorus olitorius HOM05D004621 ORTHO05D005817 3.1e-41 172.6 123 66.7
Lj1g0023758 Lotus japonicus HOM05D004621 ORTHO05D005817 3.1e-41 172.6 123 68.3
ECA234G1492 Erigeron canadensis HOM05D004621 ORTHO05D005817 4.1e-41 172.2 123 68.3
Hma1.2p1_0196F.1_g084950 Hydrangea macrophylla HOM05D004621 ORTHO05D005817 4.1e-41 172.2 122 69.7
MSTRG.25978 Avicennia marina HOM05D004621 ORTHO05D005817 5.4e-41 171.8 123 69.9
arahy.Tifrunner.gnm1.ann1.T7L0BR Arachis hypogaea HOM05D004621 ORTHO05D005817 7.0e-41 171.4 123 66.7
Cfa017997 Carpinus fangiana HOM05D004621 ORTHO05D005817 7.0e-41 171.4 123 67.5
Medtr3g104760 Medicago truncatula HOM05D004621 ORTHO05D005817 9.2e-41 171.0 123 67.5
Thecc.09G059300 Theobroma cacao HOM05D004621 ORTHO05D005817 1.2e-40 170.6 123 67.5
Cpa.g.sc126.50 Carica papaya HOM05D004621 ORTHO05D005817 2.0e-40 169.9 126 64.3
CiPaw.16G067600 Carya illinoinensis HOM05D004621 ORTHO05D005817 2.0e-40 169.9 123 66.7
EL10Ac2g03807 Beta vulgaris HOM05D004621 ORTHO05D005817 2.7e-40 169.5 123 65.9
Duzib168G0020 Durio zibethinus HOM05D004621 ORTHO05D005817 7.8e-40 167.9 123 66.7
FvH4_2g31380 Fragaria vesca HOM05D004621 ORTHO05D005817 7.8e-40 167.9 135 63.0
CsaV3_4G035890 Cucumis sativus L. HOM05D004621 ORTHO05D005817 1.0e-39 167.5 123 65.9
MBI05_g23629_MAGBIO Magnolia biondii HOM05D004621 ORTHO05D005817 1.0e-39 167.5 138 59.4
Atru.chr7.1890 Acer truncatum HOM05D004621 ORTHO05D005817 1.3e-39 167.2 123 66.7
Atru.chr7.1918 Acer truncatum HOM05D004621 ORTHO05D005817 1.3e-39 167.2 123 66.7
FAN24G3059 Fragaria x ananassa HOM05D004621 ORTHO05D005817 1.3e-39 167.2 135 63.0
Aqoxy2G03981 Aquilegia oxysepala HOM05D004621 ORTHO05D005817 1.7e-39 166.8 123 65.9
FAN20G0813 Fragaria x ananassa HOM05D004621 ORTHO05D005817 2.3e-39 166.4 139 60.4
FAN27G1750 Fragaria x ananassa HOM05D004621 ORTHO05D005817 2.3e-39 166.4 134 62.7
C02p58840 Brassica napus HOM05D004621 ORTHO05D005817 3.8e-39 165.6 128 64.1
Cc08_g11070 Coffea canephora HOM05D004621 ORTHO05D005817 8.6e-39 164.5 123 65.9
BcaC03g17845 Brassica carinata HOM05D004621 ORTHO05D005817 1.1e-38 164.1 128 63.3
Rhsim05G0135500 Rhododendron simsii HOM05D004621 ORTHO05D005817 1.1e-38 164.1 127 63.8
Aa31LG1G21020 Aethionema arabicum HOM05D004621 ORTHO05D005817 1.5e-38 163.7 123 62.6
A02p39240 Brassica napus HOM05D004621 ORTHO05D005817 1.5e-38 163.7 128 64.1
BraA02t08889Z Brassica rapa HOM05D004621 ORTHO05D005817 1.5e-38 163.7 128 64.1
PGR031G3863 Punica granatum HOM05D004621 ORTHO05D005817 1.9e-38 163.3 123 61.8
VMungo1309G3014 Vigna mungo HOM05D004621 ORTHO05D005817 1.9e-38 163.3 129 62.8
Lj8A495T43 Lonicera japonica HOM05D004621 ORTHO05D005817 2.5e-38 162.9 136 62.5
Potri.006G224000 Populus trichocarpa HOM05D004621 ORTHO05D005817 2.5e-38 162.9 138 58.7
A09p05980 Brassica napus HOM05D004621 ORTHO05D005817 3.3e-38 162.5 138 58.0
ClCG05G018120 Citrullus lanatus HOM05D004621 ORTHO05D005817 3.3e-38 162.5 132 60.6
BraA09t36240Z Brassica rapa HOM05D004621 ORTHO05D005817 4.3e-38 162.2 128 62.5
CDE08G0262 Ceratophyllum demersum HOM05D004621 ORTHO05D005817 4.3e-38 162.2 123 61.0
C09p06540 Brassica napus HOM05D004621 ORTHO05D005817 5.6e-38 161.8 128 62.5
Hund19431 Selenicereus undatus HOM05D004621 ORTHO05D005817 5.6e-38 161.8 140 60.7
BcaC04g23605 Brassica carinata HOM05D004621 ORTHO05D005817 9.5e-38 161.0 128 62.5
BolC9t53577H Brassica oleracea HOM05D004621 ORTHO05D005817 9.5e-38 161.0 128 62.5
Thhalv10004076m.g Eutrema salsugineum HOM05D004621 ORTHO05D005817 9.5e-38 161.0 123 63.4
TWI32G0723 Tripterygium wilfordii HOM05D004621 ORTHO05D005817 1.2e-37 160.6 123 62.6
BolC2t11942H Brassica oleracea HOM05D004621 ORTHO05D005817 1.6e-37 160.2 128 62.5
Sabra06G0173000 Salix brachista HOM05D004621 ORTHO05D005817 2.1e-37 159.8 138 58.0
BcaB07g29951 Brassica carinata HOM05D004621 ORTHO05D005817 2.8e-37 159.5 128 62.5
Carub.0006s2397 Capsella rubella HOM05D004621 ORTHO05D005817 3.6e-37 159.1 123 62.6
DCAR_007741 Daucus carota HOM05D004621 ORTHO05D005817 3.6e-37 159.1 143 59.4
Sp2g21560 Schrenkiella parvula HOM05D004621 ORTHO05D005817 4.7e-37 158.7 128 61.7
CARHR187480 Cardamine hirsuta HOM05D004621 ORTHO05D005817 8.0e-37 157.9 123 62.6
AT5G26180 Arabidopsis thaliana HOM05D004621 ORTHO05D005817 1.0e-36 157.5 123 61.0
Eucgr.C00676 Eucalyptus grandis HOM05D004621 ORTHO05D005817 1.0e-36 157.5 128 62.5
arahy.Tifrunner.gnm1.ann1.I8I12Q Arachis hypogaea HOM05D004621 ORTHO05D005817 1.8e-36 156.8 145 55.9
BcaB04g19746 Brassica carinata HOM05D004621 ORTHO05D005817 4.0e-36 155.6 128 60.2
unitig_88.g27672 Utricularia gibba HOM05D004621 ORTHO05D005817 5.2e-36 155.2 122 62.3
AL6G38190 Arabidopsis lyrata HOM05D004621 ORTHO05D005817 8.9e-36 154.5 123 60.2
Os02g0217800 Oryza sativa ssp. japonica HOM05D004621 ORTHO05D005817 1.7e-34 150.2 135 56.3
FAN17G2977 Fragaria x ananassa HOM05D004621 ORTHO05D005817 1.1e-33 147.5 147 51.7
Sc09g0009980 Simmondsia chinensis HOM05D004621 ORTHO05D005817 3.2e-33 146.0 115 65.2
SEGI_04699 Sequoiadendron giganteum HOM05D004621 ORTHO05D005817 4.1e-33 145.6 122 58.2
ATR0051G016 Amborella trichopoda HOM05D004621 ORTHO05D005817 5.4e-33 145.2 122 57.4
SHI18706 Sapria himalayana HOM05D004621 ORTHO05D005817 7.0e-33 144.8 120 56.7
Mapoly0057s0032 Marchantia polymorpha HOM05D004621 ORTHO05D005817 3.5e-32 142.5 123 59.3
Ah.10g034040 Amaranthus hybridus HOM05D004621 ORTHO05D005817 5.0e-31 138.7 112 62.5
Solyc08g062433.1 Solanum lycopersicum HOM05D004621 ORTHO05D005817 1.5e-30 137.1 123 64.2
Pp3c1_12750 Physcomitrium patens HOM05D004621 ORTHO05D005817 3.3e-30 136.0 122 54.9
AagrBONN_evm.TU.Sc2ySwM_228.3331 Anthoceros agrestis HOM05D004621 ORTHO05D005817 5.8e-27 125.2 127 52.8
CBR_g41718 Chara braunii HOM05D004621 ORTHO05D005817 2.2e-26 123.2 118 48.3
HPP92_023989 Vanilla planifolia HOM05D004621 ORTHO05D005817 2.9e-26 122.9 113 55.8
MELO3C016896.2 Cucumis melo HOM05D004621 ORTHO05D005817 3.7e-26 122.5 118 55.1
Haze_18137 Corylus avellana HOM05D004621 ORTHO05D005817 4.1e-25 119.0 119 52.9
Cre16.g647602 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D006241 1.2e-24 117.5 122 46.7
MCO11G750 Micromonas commoda HOM05D004621 ORTHO05D005817 2.3e-23 113.2 124 46.8
FAN15G0359 Fragaria x ananassa HOM05D004621 ORTHO05D005817 1.8e-20 103.6 76 67.1
SMO169G0045 Selaginella moellendorffii HOM05D004621 ORTHO05D005817 2.6e-19 99.8 214 34.6
MD08G1067900 Malus domestica HOM05D004621 ORTHO05D005817 1.4e-17 94.0 100 50.0
BcaB04g19747 Brassica carinata HOM05D004621 ORTHO05D005817 9.2e-17 91.3 103 48.5
Lsat_1_v5_gn_1_100981 Lactuca sativa HOM05D004621 ORTHO05D005817 2.3e-15 86.7 51 74.5
Lsat_1_v5_gn_1_46680 Lactuca sativa HOM05D004621 ORTHO05D005817 2.3e-15 86.7 51 74.5
Lsat_1_v5_gn_2_21720 Lactuca sativa HOM05D004621 ORTHO05D005817 2.3e-15 86.7 51 74.5
Lsat_1_v5_gn_4_64761 Lactuca sativa HOM05D004621 ORTHO05D005817 2.3e-15 86.7 51 74.5
Lsat_1_v5_gn_4_98001 Lactuca sativa HOM05D004621 ORTHO05D005817 2.3e-15 86.7 51 74.5
Lsat_1_v5_gn_5_184340 Lactuca sativa HOM05D004621 ORTHO05D005817 2.3e-15 86.7 51 74.5
Lsat_1_v5_gn_5_92260 Lactuca sativa HOM05D004621 ORTHO05D005817 2.3e-15 86.7 51 74.5
Lsat_1_v5_gn_6_36380 Lactuca sativa HOM05D004621 ORTHO05D005817 2.3e-15 86.7 51 74.5
Lsat_1_v5_gn_1_16680 Lactuca sativa HOM05D004621 ORTHO05D005817 1.1e-14 84.3 51 72.5
HPP92_023996 Vanilla planifolia HOM05D004621 ORTHO05D005817 1.5e-14 84.0 103 43.7
Oeu018033.1 Olea europaea HOM05D004621 ORTHO05D005817 6.2e-13 78.6 58 69.0
Zm00001eb240170 Zea mays HOM05D004621 ORTHO05D005817 1.4e-12 77.4 63 57.1
MELO3C028647.2 Cucumis melo HOM05D004621 ORTHO05D005817 3.1e-12 76.3 57 64.9
MELO3C028645.2 Cucumis melo HOM05D004621 ORTHO05D005817 7.6e-11 71.6 57 61.4
DCAR_003934 Daucus carota HOM05D004621 ORTHO05D005817 1.0e-07 61.2 46 67.4
PRCOL_00003600 Prasinoderma coloniale HOM05D004621 ORTHO05D005817 6.6e-07 58.5 143 28.7


User provided reference genes

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