Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 3.8e-246 854.4 420 100.0
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 8.4e-238 826.6 420 97.6
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 1.6e-228 795.8 420 93.3
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.7e-196 688.7 416 80.3
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 1.6e-191 672.9 407 79.6
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 5.0e-190 667.9 415 78.1
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.7e-186 654.4 411 78.3
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 6.4e-169 597.8 389 75.6
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 9.2e-152 540.8 398 70.6
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 1.3e-140 503.8 415 61.4
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 4.5e-138 495.4 417 58.8
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 2.7e-135 486.1 392 60.2
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 4.6e-135 485.3 418 57.7
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 1.3e-134 483.8 416 58.7
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 1.3e-134 483.8 395 59.5
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 2.3e-134 483.0 415 58.1
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 8.7e-134 481.1 420 56.4
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 1.6e-132 476.9 390 61.3
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 8.1e-132 474.6 416 55.8
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 1.1e-131 474.2 418 56.7
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 1.8e-131 473.4 391 59.1
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 5.3e-131 471.9 413 56.2
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.6e-130 469.5 325 71.7
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 9.9e-130 467.6 424 54.2
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 2.2e-129 466.5 417 56.4
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.8e-129 465.7 413 55.7
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 4.9e-129 465.3 414 56.8
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 4.6e-127 458.8 412 55.6
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 3.0e-126 456.1 388 58.0
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.1e-125 454.1 418 53.3
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 1.3e-124 450.7 399 60.4
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 1.6e-124 450.3 392 56.1
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 6.2e-124 448.4 392 56.6
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.1e-123 447.6 418 53.1
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.8e-123 446.8 391 56.8
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 3.1e-123 446.0 418 53.1
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 4.0e-123 445.7 391 55.5
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.6e-122 443.0 413 53.0
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 1.0e-121 441.0 413 52.8
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.3e-121 440.7 382 58.1
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 1.3e-121 440.7 392 53.8
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.7e-121 440.3 391 56.0
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 2.2e-121 439.9 395 53.9
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.1e-120 437.6 418 52.9
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 2.5e-120 436.4 393 56.5
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 4.2e-120 435.6 375 57.6
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 4.2e-120 435.6 392 54.1
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 5.5e-120 435.3 413 52.3
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 5.5e-120 435.3 413 52.3
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 1.2e-119 434.1 394 53.3
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 3.9e-118 429.1 393 54.5
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 8.7e-118 427.9 399 52.6
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 3.3e-117 426.0 367 58.0
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 5.7e-117 425.2 392 54.6
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 7.4e-117 424.9 390 54.6
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 4.8e-116 422.2 394 53.3
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.1e-115 421.0 294 71.4
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 1.2e-114 417.5 404 50.5
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 1.3e-113 414.1 379 53.0
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 4.2e-112 409.1 400 51.5
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 4.6e-111 405.6 424 51.9
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 1.0e-110 404.4 390 52.8
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 1.8e-110 403.7 385 53.0
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 7.4e-109 398.3 389 50.6
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 4.8e-108 395.6 414 49.0
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 2.4e-107 393.3 419 50.1
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 4.1e-107 392.5 404 49.0
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 1.2e-106 391.0 391 49.9
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 1.5e-106 390.6 385 49.1
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 5.9e-106 388.7 391 51.4
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 5.9e-106 388.7 403 49.1
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 7.7e-106 388.3 412 46.6
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 1.3e-105 387.5 377 49.3
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 2.9e-105 386.3 385 49.6
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 5.0e-105 385.6 398 49.5
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 4.2e-104 382.5 373 53.1
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 1.6e-103 380.6 374 50.5
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 7.9e-103 378.3 399 49.1
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 3.0e-102 376.3 369 52.8
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 5.1e-102 375.6 370 53.0
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 2.0e-101 373.6 375 48.8
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 3.3e-101 372.9 395 49.4
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 5.7e-101 372.1 375 51.5
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 7.4e-101 371.7 395 49.4
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 7.4e-101 371.7 407 50.1
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 2.4e-99 366.7 369 52.0
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 4.1e-99 365.9 426 46.9
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 1.2e-98 364.4 366 52.2
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 1.5e-98 364.0 396 47.5
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 7.7e-98 361.7 396 48.0
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 1.7e-97 360.5 396 48.2
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 2.2e-97 360.1 396 48.0
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 3.8e-97 359.4 427 44.7
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 1.1e-96 357.8 386 46.9
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 5.5e-96 355.5 360 51.9
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 2.1e-95 353.6 384 46.4
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 5.2e-94 349.0 384 46.4
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 1.5e-93 347.4 384 46.1
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 9.7e-93 344.7 384 45.6
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 2.2e-92 343.6 379 48.3
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.8e-91 340.5 413 46.5
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 6.1e-87 325.5 253 61.7
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 2.5e-80 303.5 298 50.3
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-77 294.7 169 82.8
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 1.4e-75 287.7 214 70.6
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 5.4e-75 285.8 389 40.6
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 8.0e-71 271.9 224 57.6
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 8.0e-71 271.9 248 55.6
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.0e-70 269.6 322 48.1
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 8.3e-68 261.9 264 50.4
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 2.0e-66 257.3 267 47.9
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 1.7e-65 254.2 195 67.7
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.6e-63 247.7 278 50.0
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 1.0e-62 245.0 202 56.9
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 1.4e-62 244.6 262 48.5
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 6.8e-62 242.3 171 66.1
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 6.8e-62 242.3 291 44.7
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 8.9e-62 241.9 193 56.5
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 3.4e-61 240.0 403 37.5
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.1e-59 235.0 136 80.1
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 3.3e-56 223.4 409 34.2
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 2.8e-55 220.3 401 33.7
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 2.1e-50 204.1 190 51.6
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 2.1e-50 204.1 415 31.3
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 2.1e-47 194.1 175 53.1
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.3e-46 190.7 212 50.5
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 3.1e-46 190.3 420 30.0
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-43 181.0 110 79.1
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.2e-43 178.7 111 77.5
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 4.3e-40 169.9 247 42.1
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.6e-40 169.5 113 74.3
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.8e-39 167.2 113 73.5
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 1.2e-29 135.2 175 44.0
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 2.2e-28 131.0 164 45.1
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.8e-28 130.2 87 74.7
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 5.1e-25 119.8 101 51.5
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.1e-23 114.4 71 77.5
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 8.1e-23 112.5 80 71.2
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 9.9e-21 105.5 97 51.5
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 1.1e-08 65.5 52 59.6
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 8.2e-07 59.3 72 37.5
Peaxi162Scf00365g00014 Petunia axillaris HOM05D000001 ORTHO05D004044 5.3e-06 56.6 105 41.0


User provided reference genes

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