Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g061260.4 Solanum lycopersicum HOM05D006118 ORTHO05D007750 3.1e-187 658.3 323 100.0
Sopen08g016640 Solanum pennellii HOM05D006118 ORTHO05D007750 3.1e-187 658.3 323 100.0
PGSC0003DMG402012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 1.2e-183 646.4 323 98.5
Migut.E01785 Erythranthe guttata HOM05D006118 ORTHO05D007750 4.2e-160 568.2 323 85.8
Cc08_g01010 Coffea canephora HOM05D006118 ORTHO05D007750 3.0e-158 562.0 328 84.1
MSTRG.14088 Avicennia marina HOM05D006118 ORTHO05D007750 8.7e-158 560.5 323 84.5
Nitab4.5_0001576g0100 Nicotiana tabacum HOM05D006118 ORTHO05D007750 5.6e-157 557.8 321 88.5
SGA_v2.0_scaffold163G37995 Striga asiatica HOM05D006118 ORTHO05D007750 2.4e-155 552.4 337 82.2
HanXRQChr09g0261891 Helianthus annuus HOM05D006118 ORTHO05D007750 2.7e-151 538.9 325 79.7
GSVIVG01035487001 Vitis vinifera HOM05D006118 ORTHO05D007750 1.8e-150 536.2 323 84.5
DCAR_003726 Daucus carota HOM05D006118 ORTHO05D007750 1.5e-149 533.1 333 77.8
Rhsim13G0216900 Rhododendron simsii HOM05D006118 ORTHO05D007750 4.3e-149 531.6 324 79.9
Hma1.2p1_0641F.1_g194200 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 1.1e-147 526.9 312 81.7
Thecc.04G313700 Theobroma cacao HOM05D006118 ORTHO05D007750 4.0e-147 525.0 324 81.2
Cpa.g.sc146.16 Carica papaya HOM05D006118 ORTHO05D007750 9.9e-146 520.4 325 81.2
Lsat_1_v5_gn_8_70541 Lactuca sativa HOM05D006118 ORTHO05D007750 3.8e-145 518.5 325 78.2
Gorai.005G073100 Gossypium raimondii HOM05D006118 ORTHO05D007750 1.1e-144 516.9 324 80.6
CiPaw.16G067300 Carya illinoinensis HOM05D006118 ORTHO05D007750 1.4e-144 516.5 316 81.3
Gohir.D02G064600 Gossypium hirsutum HOM05D006118 ORTHO05D007750 1.9e-144 516.2 324 80.6
TAR624G0180 Trochodendron aralioides HOM05D006118 ORTHO05D007750 1.9e-144 516.2 324 80.9
Gohir.A02G058900 Gossypium hirsutum HOM05D006118 ORTHO05D007750 2.4e-144 515.8 324 80.6
Prupe.1G402500 Prunus persica HOM05D006118 ORTHO05D007750 2.1e-143 512.7 323 78.0
CSS0045297 Camellia sinensis var. sinensis HOM05D006118 ORTHO05D007750 6.0e-143 511.1 288 84.7
ClCG05G015850 Citrullus lanatus HOM05D006118 ORTHO05D007750 1.3e-142 510.0 322 79.2
Ciclev10005468m.g Citrus clementina HOM05D006118 ORTHO05D007750 1.3e-142 510.0 319 79.6
Eucgr.C00739 Eucalyptus grandis HOM05D006118 ORTHO05D007750 1.3e-142 510.0 313 81.2
arahy.Tifrunner.gnm1.ann1.ZI0SGT Arachis hypogaea HOM05D006118 ORTHO05D007750 2.3e-142 509.2 322 78.0
MD08G1073200 Malus domestica HOM05D006118 ORTHO05D007750 2.3e-142 509.2 324 77.2
FvH4_2g30820 Fragaria vesca HOM05D006118 ORTHO05D007750 5.1e-142 508.1 324 78.1
FAN20G1786 Fragaria x ananassa HOM05D006118 ORTHO05D007750 5.1e-142 508.1 324 78.1
PSO063G1448 Papaver somniferum HOM05D006118 ORTHO05D007750 5.1e-142 508.1 324 78.1
MELO3C016921.2 Cucumis melo HOM05D006118 ORTHO05D007750 1.9e-141 506.1 322 78.6
PSO421G0086 Papaver somniferum HOM05D006118 ORTHO05D007750 1.9e-141 506.1 324 78.4
CANSAT25G1353 Cannabis sativa HOM05D006118 ORTHO05D007750 2.5e-141 505.8 326 78.5
CsaV3_4G036130 Cucumis sativus L. HOM05D006118 ORTHO05D007750 2.5e-141 505.8 322 78.6
RcHm_v2.0_Chr6g0312021 Rosa chinensis HOM05D006118 ORTHO05D007750 2.5e-141 505.8 324 77.2
vmacro04115 Vaccinium macrocarpon HOM05D006118 ORTHO05D007750 2.5e-141 505.8 388 66.8
FAN15G2451 Fragaria x ananassa HOM05D006118 ORTHO05D007750 5.6e-141 504.6 324 77.5
SalBow1G5335 Salvia bowleyana HOM05D006118 ORTHO05D007750 1.6e-140 503.1 426 64.8
Peaxi162Scf00486g00116 Petunia axillaris HOM05D006118 ORTHO05D007750 2.8e-140 502.3 323 80.8
FAN27G1493 Fragaria x ananassa HOM05D006118 ORTHO05D007750 3.7e-140 501.9 324 77.2
Atru.chr4.3167 Acer truncatum HOM05D006118 ORTHO05D007750 1.8e-139 499.6 324 78.1
arahy.Tifrunner.gnm1.ann1.Z643MN Arachis hypogaea HOM05D006118 ORTHO05D007750 3.1e-139 498.8 332 75.3
Carub.0001s3740 Capsella rubella HOM05D006118 ORTHO05D007750 6.9e-139 497.7 330 76.1
Duzib151G0955 Durio zibethinus HOM05D006118 ORTHO05D007750 9.0e-139 497.3 303 80.9
AT1G48270 Arabidopsis thaliana HOM05D006118 ORTHO05D007750 1.2e-138 496.9 330 75.8
MD15G1048100 Malus domestica HOM05D006118 ORTHO05D007750 2.6e-138 495.7 324 75.3
AL1G54870 Arabidopsis lyrata HOM05D006118 ORTHO05D007750 3.4e-138 495.4 330 75.5
Sabra08G0153100 Salix brachista HOM05D006118 ORTHO05D007750 7.6e-138 494.2 328 76.5
Aqoxy7G01030 Aquilegia oxysepala HOM05D006118 ORTHO05D007750 1.0e-137 493.8 324 76.5
CARHR037890 Cardamine hirsuta HOM05D006118 ORTHO05D007750 1.0e-137 493.8 331 75.5
Sed0026686 Sechium edule HOM05D006118 ORTHO05D007750 1.7e-137 493.0 305 78.4
Ca_13095_v3 Cicer arietinum L. HOM05D006118 ORTHO05D007750 2.5e-136 489.2 324 76.2
Thhalv10011644m.g Eutrema salsugineum HOM05D006118 ORTHO05D007750 5.5e-136 488.0 332 74.1
Glyma.17G219300 Glycine max HOM05D006118 ORTHO05D007750 5.5e-136 488.0 322 75.8
BolC6t35406H Brassica oleracea HOM05D006118 ORTHO05D007750 9.3e-136 487.3 331 74.3
Phvul.001G044800 Phaseolus vulgaris HOM05D006118 ORTHO05D007750 2.1e-135 486.1 322 75.2
Lj5g0024511 Lotus japonicus HOM05D006118 ORTHO05D007750 3.5e-135 485.3 324 74.7
Sp1g35230 Schrenkiella parvula HOM05D006118 ORTHO05D007750 1.3e-134 483.4 332 73.5
BcaB07g33772 Brassica carinata HOM05D006118 ORTHO05D007750 3.0e-134 482.3 332 73.5
PGR142G4277 Punica granatum HOM05D006118 ORTHO05D007750 5.1e-134 481.5 320 74.4
BcaC08g43024 Brassica carinata HOM05D006118 ORTHO05D007750 1.1e-133 480.3 332 73.2
C06p02770 Brassica napus HOM05D006118 ORTHO05D007750 1.1e-133 480.3 332 73.2
A06p04570 Brassica napus HOM05D006118 ORTHO05D007750 1.5e-133 479.9 333 73.3
BraA06t23661Z Brassica rapa HOM05D006118 ORTHO05D007750 1.5e-133 479.9 333 73.3
Manes.03G212200 Manihot esculenta HOM05D006118 ORTHO05D007750 9.6e-133 477.2 324 76.5
Lalb_Chr24g0393681 Lupinus albus HOM05D006118 ORTHO05D007750 5.3e-131 471.5 321 74.1
Actinidia01325 Actinidia chinensis HOM05D006118 ORTHO05D007750 6.9e-131 471.1 271 84.1
Oeu036787.2 Olea europaea HOM05D006118 ORTHO05D007750 1.2e-130 470.3 274 83.9
Dinv41849 Davidia involucrata HOM05D006118 ORTHO05D007750 1.5e-130 469.9 261 86.6
VMungo0647G1968 Vigna mungo HOM05D006118 ORTHO05D007750 2.0e-130 469.5 287 79.4
Glyma.14G107200 Glycine max HOM05D006118 ORTHO05D007750 5.9e-130 468.0 287 79.1
THA.LOC104824720 Tarenaya hassleriana HOM05D006118 ORTHO05D007750 6.7e-126 454.5 319 74.0
Sc06g0000090 Simmondsia chinensis HOM05D006118 ORTHO05D007750 8.7e-126 454.1 316 72.5
ECA236G0212 Erigeron canadensis HOM05D006118 ORTHO05D007750 3.3e-125 452.2 263 80.6
Hma1.2p1_0641F.1_g194210 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 1.0e-121 440.7 250 84.0
Medtr1g015010 Medicago truncatula HOM05D006118 ORTHO05D007750 1.4e-120 436.8 324 70.4
TWI53G1421 Tripterygium wilfordii HOM05D006118 ORTHO05D007750 4.6e-119 431.8 318 72.3
Aa31LG10G5490 Aethionema arabicum HOM05D006118 ORTHO05D007750 2.6e-117 426.0 330 68.2
Psat6g023080 Pisum sativum HOM05D006118 ORTHO05D007750 5.7e-117 424.9 287 75.3
Os06g0199800 Oryza sativa ssp. japonica HOM05D006118 ORTHO05D007750 6.3e-116 421.4 303 68.0
Oeu024208.1 Olea europaea HOM05D006118 ORTHO05D007750 1.4e-115 420.2 247 83.4
CDE06G0461 Ceratophyllum demersum HOM05D006118 ORTHO05D007750 9.1e-115 417.5 297 70.7
COL.COLO4_34509 Corchorus olitorius HOM05D006118 ORTHO05D007750 4.5e-114 415.2 376 61.4
FAN24G3410 Fragaria x ananassa HOM05D006118 ORTHO05D007750 2.7e-111 406.0 258 77.1
Potri.008G206000 Populus trichocarpa HOM05D006118 ORTHO05D007750 6.1e-111 404.8 288 71.9
AagrBONN_evm.TU.Sc2ySwM_228.1339 Anthoceros agrestis HOM05D006118 ORTHO05D007750 7.9e-111 404.4 314 64.6
TPR.G38901 Trifolium pratense HOM05D006118 ORTHO05D007750 1.1e-109 400.6 264 75.0
AUR62020280 Chenopodium quinoa HOM05D006118 ORTHO05D007750 1.5e-109 400.2 300 70.7
Ah.12g061330 Amaranthus hybridus HOM05D006118 ORTHO05D007750 1.3e-105 387.1 320 64.7
Mapoly0073s0070 Marchantia polymorpha HOM05D006118 ORTHO05D007750 4.0e-102 375.6 312 60.9
EL10Ac2g02406 Beta vulgaris HOM05D006118 ORTHO05D007750 5.2e-102 375.2 319 63.6
Pp3c15_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 5.9e-98 361.7 308 58.4
Pp3c9_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 5.0e-97 358.6 287 61.0
Hund25545 Selenicereus undatus HOM05D006118 ORTHO05D007750 2.5e-96 356.3 287 66.2
SMO119G0499 Selaginella moellendorffii HOM05D006118 ORTHO05D007750 9.8e-93 344.4 267 62.5
Haze_18321 Corylus avellana HOM05D006118 ORTHO05D007750 1.2e-90 337.4 645 37.4
PGSC0003DMG401012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 1.1e-88 330.9 163 98.2
AUR62037725 Chenopodium quinoa HOM05D006118 ORTHO05D007750 3.2e-88 329.3 268 65.7
Lj7A209G43 Lonicera japonica HOM05D006118 ORTHO05D007750 1.8e-86 323.6 240 68.8
ATR0598G044 Amborella trichopoda HOM05D006118 ORTHO05D007750 2.3e-86 323.2 209 75.1
Nitab4.5_0009849g0030 Nicotiana tabacum HOM05D006118 ORTHO05D007750 6.3e-84 315.1 325 59.1
HPP92_016236 Vanilla planifolia HOM05D006118 ORTHO05D007750 1.9e-80 303.5 316 52.8
arahy.Tifrunner.gnm1.ann1.C1NZN8 Arachis hypogaea HOM05D006118 ORTHO05D007750 3.7e-76 289.3 331 53.5
BcaB01g03835 Brassica carinata HOM05D006118 ORTHO05D007750 1.5e-72 277.3 192 72.4
Zm00001eb278600 Zea mays HOM05D006118 ORTHO05D007750 2.1e-71 273.5 191 65.4
CBR_g36835 Chara braunii HOM05D006118 ORTHO05D007750 1.3e-68 264.2 225 59.6
BcaB08g36375 Brassica carinata HOM05D006118 ORTHO05D007750 9.5e-64 248.1 192 67.7
unitig_8.g4842 Utricularia gibba HOM05D006118 ORTHO05D007750 6.8e-62 241.9 157 73.9
MD15G1048300 Malus domestica HOM05D006118 ORTHO05D007750 9.2e-59 231.5 246 54.1
arahy.Tifrunner.gnm1.ann1.K6H74S Arachis hypogaea HOM05D006118 ORTHO05D007750 3.0e-57 226.5 164 70.1
BcaB01g01553 Brassica carinata HOM05D006118 ORTHO05D007750 9.2e-51 204.9 152 66.4
BcaB07g32513 Brassica carinata HOM05D006118 ORTHO05D007750 3.0e-49 199.9 178 56.7
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 1.5e-45 187.6 129 72.9
Lalb_Chr23g0268011 Lupinus albus HOM05D006118 ORTHO05D007750 3.9e-41 172.9 101 78.2
Lj7A209G42 Lonicera japonica HOM05D006118 ORTHO05D007750 1.9e-40 170.6 90 87.8
PRCOL_00004868 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 3.5e-34 149.8 275 36.0
ATR0684G160 Amborella trichopoda HOM05D006118 ORTHO05D007750 6.2e-31 139.0 95 72.6
PRCOL_00005697 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 2.2e-28 130.6 332 28.6
SEGI_23264 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 6.0e-26 122.5 80 72.5
MCO03G156 Micromonas commoda HOM05D006118 ORTHO05D007750 1.8e-17 94.4 364 26.1
Lalb_Chr23g0268021 Lupinus albus HOM05D006118 ORTHO05D007750 2.9e-12 77.0 46 76.1
BcaB01g01552 Brassica carinata HOM05D006118 ORTHO05D007750 4.2e-11 73.2 52 71.2
MD15G1048200 Malus domestica HOM05D006118 ORTHO05D007750 3.7e-07 60.1 64 59.4
MSTRG.1710 Avicennia marina HOM05D006118 ORTHO05D007750 2.4e-06 57.4 65 50.8
SEGI_18851 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 2.4e-06 57.4 60 56.7


User provided reference genes

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