Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g013660 Solanum pennellii HOM05D003654 ORTHO05D004176 4.3e-36 154.1 75 100.0
Solyc08g044540.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 9.7e-36 152.9 75 98.7
CAN.G1258.3 Capsicum annuum HOM05D003654 ORTHO05D004176 3.7e-27 124.4 78 79.5
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.7e-22 108.2 77 72.7
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 6.3e-19 97.1 77 67.5
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.0e-18 93.6 74 68.9
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 6.5e-08 60.5 37 67.6
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.1e-07 59.7 73 42.5
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 1.5e-07 59.3 38 63.2
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 1.5e-07 59.3 38 63.2
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.5e-07 59.3 85 40.0
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.5e-07 59.3 77 44.2
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.5e-07 59.3 57 45.6
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 1.9e-07 58.9 87 41.4
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.5e-07 58.5 38 65.8
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 3.2e-07 58.2 37 64.9
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 3.2e-07 58.2 37 64.9
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 3.2e-07 58.2 37 64.9
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.2e-07 58.2 67 41.8
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 3.2e-07 58.2 79 39.2
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 4.2e-07 57.8 77 40.3
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 4.2e-07 57.8 35 68.6
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.2e-07 57.8 75 41.3
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 5.5e-07 57.4 38 63.2
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 5.5e-07 57.4 69 43.5
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 7.2e-07 57.0 75 37.3
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 7.2e-07 57.0 34 70.6
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 7.2e-07 57.0 34 70.6
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 7.2e-07 57.0 38 60.5
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 9.4e-07 56.6 75 37.3
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 9.4e-07 56.6 34 67.6
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 9.4e-07 56.6 39 64.1
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 1.2e-06 56.2 70 42.9
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.2e-06 56.2 34 70.6
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 1.2e-06 56.2 84 38.1
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 1.6e-06 55.8 37 62.2
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.6e-06 55.8 37 62.2
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.6e-06 55.8 37 62.2
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.6e-06 55.8 37 62.2
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 1.6e-06 55.8 37 62.2
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 1.6e-06 55.8 37 62.2
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.6e-06 55.8 60 46.7
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.6e-06 55.8 60 46.7
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.6e-06 55.8 60 46.7
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.6e-06 55.8 82 35.4
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 2.1e-06 55.5 70 42.9
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 2.1e-06 55.5 81 37.0
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 3.6e-06 54.7 34 58.8
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.6e-06 54.7 82 34.1
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 4.7e-06 54.3 38 57.9
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 4.7e-06 54.3 38 60.5
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.7e-06 54.3 38 60.5
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 4.7e-06 54.3 75 34.7
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 4.7e-06 54.3 35 62.9
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 4.7e-06 54.3 81 39.5
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 4.7e-06 54.3 84 35.7
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 6.1e-06 53.9 42 50.0
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 6.1e-06 53.9 38 57.9
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.1e-06 53.9 52 48.1
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 6.1e-06 53.9 37 62.2
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 8.0e-06 53.5 35 60.0
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 8.0e-06 53.5 88 42.0


User provided reference genes

Program Settings