Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g011640 Solanum pennellii HOM05D008880 ORTHO05D001544 5.9e-138 494.2 249 100.0
Sopen08g011630 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-133 479.9 242 99.6
Sopen01g006740 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen01g021410 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen02g017450 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen04g011600 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen04g018310 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen04g023650 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen05g021830 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen09g020870 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen11g015120 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen11g015130 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen12g003850 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen12g003860 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen12g023960 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen12g023970 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-115 417.5 273 80.6
Sopen05g009710 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-114 415.6 273 80.2
Sopen07g002700 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-114 415.6 273 80.2
Sopen04g026340 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-113 413.3 273 79.9
Sopen10g013010 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-113 413.3 273 79.9
Sopen10g016600 Solanum pennellii HOM05D000002 ORTHO05D001544 2.8e-111 405.6 273 78.8
Sopen11g023840 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-106 388.7 271 76.4
Sopen07g019940 Solanum pennellii HOM05D008880 ORTHO05D001544 1.5e-104 383.3 254 80.7
Sopen05g028350 Solanum pennellii HOM05D000002 ORTHO05D000001 9.5e-96 354.0 243 79.4
Sopen07g011850 Solanum pennellii HOM05D000002 ORTHO05D001544 2.9e-92 342.4 249 73.1
Sopen05g014770 Solanum pennellii HOM05D000002 ORTHO05D000001 7.8e-82 307.8 199 83.4
Sopen01g011800 Solanum pennellii HOM05D000002 ORTHO05D001544 1.1e-56 224.2 174 70.7
Sopen08g016350 Solanum pennellii HOM05D000002 ORTHO05D001544 2.1e-55 219.9 171 70.8
SGA_v2.0_scaffold43G16507 Striga asiatica HOM05D000002 ORTHO05D000001 4.0e-46 189.1 272 42.3
TWI56G0460 Tripterygium wilfordii HOM05D008880 ORTHO05D001544 4.5e-45 185.7 162 56.8
TWI34G1618 Tripterygium wilfordii HOM05D008880 ORTHO05D001544 1.7e-44 183.7 162 56.2
TWI56G0777 Tripterygium wilfordii HOM05D008880 ORTHO05D001544 6.5e-44 181.8 231 47.6
SGA_v2.0_scaffold48G17859 Striga asiatica HOM05D000002 ORTHO05D000001 1.6e-39 167.2 272 39.7
TWI53G0611 Tripterygium wilfordii HOM05D000002 ORTHO05D001544 8.2e-39 164.9 145 55.9
Sopen12g025090 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-37 161.0 93 83.9
Manes.01G044150 Manihot esculenta HOM05D000002 ORTHO05D001544 2.5e-35 153.3 213 43.7
Sopen09g009920 Solanum pennellii HOM05D000002 ORTHO05D000001 2.8e-31 139.8 109 74.3
Manes.17G029910 Manihot esculenta HOM05D008880 ORTHO05D001544 8.2e-31 138.3 161 47.8
Sopen07g019310 Solanum pennellii HOM05D000002 ORTHO05D000001 5.3e-30 135.6 78 83.3
Atru.chr1.2215 Acer truncatum HOM05D000002 ORTHO05D000001 1.3e-28 131.0 262 33.6
Migut.N03229 Erythranthe guttata HOM05D001093 ORTHO05D000743 1.4e-27 127.5 274 31.8
Migut.C00417 Erythranthe guttata HOM05D000002 ORTHO05D001544 5.5e-27 125.6 226 38.1
Ciclev10033628m.g Citrus clementina HOM05D000002 ORTHO05D001544 1.8e-25 120.6 261 31.8
MELO3C030135.2 Cucumis melo HOM05D000002 ORTHO05D000001 7.4e-24 115.2 227 32.2
PGR031G0672 Punica granatum HOM05D000002 ORTHO05D001544 7.4e-24 115.2 288 29.9
FvH4_5g29991 Fragaria vesca HOM05D000002 ORTHO05D000001 1.3e-23 114.4 269 32.0
PGR031G1414 Punica granatum HOM05D008880 ORTHO05D001544 1.8e-22 110.5 170 37.1
PSO266G0024 Papaver somniferum HOM05D008880 ORTHO05D001544 2.4e-22 110.2 129 43.4
PSO266G0078 Papaver somniferum HOM05D008880 ORTHO05D001544 2.4e-22 110.2 129 43.4
RcHm_v2.0_Chr2g0176521 Rosa chinensis HOM05D000002 ORTHO05D001544 3.1e-22 109.8 158 39.2
Ciclev10003960m.g Citrus clementina HOM05D000002 ORTHO05D001544 4.1e-22 109.4 219 34.7
RcHm_v2.0_Chr1g0376911 Rosa chinensis HOM05D000002 ORTHO05D001544 9.1e-22 108.2 158 38.6
MD00G1044200 Malus domestica HOM05D000002 ORTHO05D001544 2.6e-21 106.7 271 28.4
PSO063G4397 Papaver somniferum HOM05D008880 ORTHO05D001544 3.4e-21 106.3 118 47.5
Gorai.010G113500 Gossypium raimondii HOM05D000002 ORTHO05D001544 5.9e-21 105.5 239 32.2
Sopen09g024140 Solanum pennellii HOM05D000002 ORTHO05D051332 5.9e-21 105.5 157 46.5
TAR522G0001 Trochodendron aralioides HOM05D000002 ORTHO05D001544 1.3e-20 104.4 109 50.5
Sabra02G0155800 Salix brachista HOM05D000002 ORTHO05D001544 3.2e-19 99.8 237 28.7
CAN.G837.12 Capsicum annuum HOM05D000075 ORTHO05D000073 4.7e-18 95.9 86 54.7
Ciclev10003434m.g Citrus clementina HOM05D000002 ORTHO05D001544 4.7e-18 95.9 230 31.7
Sabra01G0122400 Salix brachista HOM05D000002 ORTHO05D001544 8.8e-17 91.7 241 27.4
Sabra05G0136100 Salix brachista HOM05D000002 ORTHO05D001544 8.8e-17 91.7 265 26.4
Sabra11G0023000 Salix brachista HOM05D000002 ORTHO05D001544 8.8e-17 91.7 265 26.4
Sabra02G0093900 Salix brachista HOM05D000002 ORTHO05D001544 1.1e-16 91.3 265 26.4
Sabra15G0127600 Salix brachista HOM05D000002 ORTHO05D001544 1.1e-16 91.3 265 26.0
Sabra18G0125600 Salix brachista HOM05D000002 ORTHO05D001544 1.1e-16 91.3 265 26.4
Sabra13G0091600 Salix brachista HOM05D000002 ORTHO05D001544 2.6e-16 90.1 265 26.4
PGR031G0989 Punica granatum HOM05D000002 ORTHO05D001544 3.3e-16 89.7 120 41.7
TWI48G0001 Tripterygium wilfordii HOM05D000002 ORTHO05D001544 9.7e-16 88.2 156 32.1
Sabra10G0050700 Salix brachista HOM05D000002 ORTHO05D001544 1.7e-15 87.4 265 26.4
Ciclev10006597m.g Citrus clementina HOM05D000002 ORTHO05D001544 6.3e-15 85.5 158 31.6
PGR004G0150 Punica granatum HOM05D008880 ORTHO05D001544 8.2e-15 85.1 135 37.8
PGR004G1810 Punica granatum HOM05D008880 ORTHO05D001544 8.2e-15 85.1 135 37.0
PGR031G0772 Punica granatum HOM05D000002 ORTHO05D001544 8.2e-15 85.1 120 40.0
TWI73G0861 Tripterygium wilfordii HOM05D000002 ORTHO05D001544 8.2e-15 85.1 164 31.7
HanXRQChr02g0036901 Helianthus annuus HOM05D000002 ORTHO05D001544 1.1e-14 84.7 281 28.1
MELO3C029617.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.4e-14 84.3 210 29.0
HanXRQChr11g0327471 Helianthus annuus HOM05D000002 ORTHO05D000001 2.4e-14 83.6 273 27.1
PSO541G2218 Papaver somniferum HOM05D000002 ORTHO05D001544 3.1e-14 83.2 88 52.3
PGR083G2594 Punica granatum HOM05D000002 ORTHO05D001544 7.0e-14 82.0 127 33.9
Ciclev10010288m.g Citrus clementina HOM05D000002 ORTHO05D001544 9.1e-14 81.6 136 34.6
CANSAT21G0142 Cannabis sativa HOM05D008880 ORTHO05D011235 1.2e-13 81.3 165 29.7
Atru.chr6.681 Acer truncatum HOM05D008880 ORTHO05D011235 1.6e-13 80.9 152 33.6
PSO017G3397 Papaver somniferum HOM05D000002 ORTHO05D001544 2.0e-13 80.5 86 51.2
PGR031G3187 Punica granatum HOM05D008880 ORTHO05D001544 2.6e-13 80.1 162 32.1
PGR070G0004 Punica granatum HOM05D008880 ORTHO05D001544 4.5e-13 79.3 100 39.0
TWI39G0463 Tripterygium wilfordii HOM05D000002 ORTHO05D001544 4.5e-13 79.3 93 44.1
Sp5g20870 Schrenkiella parvula HOM05D000002 ORTHO05D001544 5.9e-13 79.0 156 28.8
TWI39G1064 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 5.9e-13 79.0 156 37.8
Thhalv10005360m.g Eutrema salsugineum HOM05D000002 ORTHO05D001544 7.7e-13 78.6 164 29.3
HanXRQChr06g0164281 Helianthus annuus HOM05D000002 ORTHO05D001544 1.0e-12 78.2 266 28.2
CANSAT11G0103 Cannabis sativa HOM05D008880 ORTHO05D011235 1.7e-12 77.4 165 30.3
Thhalv10024012m.g Eutrema salsugineum HOM05D000002 ORTHO05D001544 2.9e-12 76.6 157 29.3
Thhalv10022479m.g Eutrema salsugineum HOM05D000002 ORTHO05D001544 3.8e-12 76.3 156 28.8
HanXRQChr12g0375451 Helianthus annuus HOM05D000002 ORTHO05D001544 3.8e-12 76.3 252 28.2
MELO3C034480.2 Cucumis melo HOM05D013798 ORTHO05D011235 5.0e-12 75.9 84 41.7
Gorai.007G234500 Gossypium raimondii HOM05D000002 ORTHO05D001544 8.5e-12 75.1 156 30.1
CANSAT35G0612 Cannabis sativa HOM05D008880 ORTHO05D011235 1.5e-11 74.3 156 30.1
THA.LOC104820462 Tarenaya hassleriana HOM05D000002 ORTHO05D001544 3.2e-11 73.2 164 30.5
Manes.06G038551 Manihot esculenta HOM05D000002 ORTHO05D001544 5.5e-11 72.4 272 26.1
Manes.17G026082 Manihot esculenta HOM05D000002 ORTHO05D001544 5.5e-11 72.4 286 26.2
TWI53G1412 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 1.6e-10 70.9 167 32.3
TAR180G0006 Trochodendron aralioides HOM05D000002 ORTHO05D001134 1.6e-10 70.9 267 24.3
ECA236G0816 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.7e-10 70.1 239 24.3
Sabra16G0242800 Salix brachista HOM05D000002 ORTHO05D001544 4.7e-10 69.3 274 24.1
Carub.0056s0001 Capsella rubella HOM05D000002 ORTHO05D001544 6.1e-10 68.9 133 31.6
Sed0006131 Sechium edule HOM05D013798 ORTHO05D011235 8.0e-10 68.6 124 32.3
TAR152G0004 Trochodendron aralioides HOM05D000002 ORTHO05D001134 8.0e-10 68.6 150 32.0
ECA238G4751 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.0e-09 68.2 234 25.2
Ciclev10006890m.g Citrus clementina HOM05D000002 ORTHO05D001544 8.8e-09 65.1 176 29.5
ECA232G2907 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-08 64.7 234 24.4
Thhalv10029482m.g Eutrema salsugineum HOM05D000002 ORTHO05D001544 1.2e-08 64.7 202 27.7
PSO266G0057 Papaver somniferum HOM05D000002 ORTHO05D001544 1.5e-08 64.3 161 29.8
CANSAT80G1402 Cannabis sativa HOM05D008880 ORTHO05D011235 3.3e-08 63.2 124 26.6
AUR62040346 Chenopodium quinoa HOM05D000002 ORTHO05D001134 3.3e-08 63.2 151 23.2
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 3.3e-08 63.2 201 24.9
THA.LOC104810251 Tarenaya hassleriana HOM05D000002 ORTHO05D001544 3.3e-08 63.2 143 30.1
MD03G1045100 Malus domestica HOM05D000002 ORTHO05D001134 4.4e-08 62.8 275 23.6
ECA238G1847 Erigeron canadensis HOM05D000002 ORTHO05D001544 5.7e-08 62.4 214 26.6
PSO782G4997 Papaver somniferum HOM05D000002 ORTHO05D000001 5.7e-08 62.4 152 25.7
CANSAT54G0364 Cannabis sativa HOM05D008880 ORTHO05D011235 9.7e-08 61.6 101 28.7
ECA236G4071 Erigeron canadensis HOM05D000002 ORTHO05D001544 9.7e-08 61.6 270 27.0
ECA248G3129 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.7e-08 61.6 214 26.6
Prupe.2G062600 Prunus persica HOM05D000002 ORTHO05D001544 9.7e-08 61.6 167 28.1
PSO528G0128 Papaver somniferum HOM05D000002 ORTHO05D001134 1.3e-07 61.2 159 28.3
TAR404G0001 Trochodendron aralioides HOM05D000002 ORTHO05D001134 1.3e-07 61.2 69 44.9
ECA232G1132 Erigeron canadensis HOM05D000002 ORTHO05D001544 1.7e-07 60.8 155 29.0
ECA236G4726 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.7e-07 60.8 269 22.3
HanXRQChr01g0004521 Helianthus annuus HOM05D000002 ORTHO05D001544 1.7e-07 60.8 140 31.4
SHI25073 Sapria himalayana HOM05D000002 ORTHO05D001544 1.7e-07 60.8 74 47.3
CANSAT11G0442 Cannabis sativa HOM05D008880 ORTHO05D011235 2.2e-07 60.5 155 27.1
CsaV3_3G007990 Cucumis sativus L. HOM05D001889 ORTHO05D001853 2.2e-07 60.5 175 26.9
PGSC0003DMG400041378 Solanum tuberosum HOM05D000002 ORTHO05D051332 2.2e-07 60.5 69 52.2
ECA246G2881 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-07 60.1 260 22.7
PSO731G0088 Papaver somniferum HOM05D000002 ORTHO05D001134 2.8e-07 60.1 158 27.8
RcHm_v2.0_Chr1g0368471 Rosa chinensis HOM05D000002 ORTHO05D001134 2.8e-07 60.1 275 25.1
CANSAT80G2087 Cannabis sativa HOM05D008880 ORTHO05D011235 3.7e-07 59.7 161 26.1
MELO3C035074.2 Cucumis melo HOM05D008649 ORTHO05D009980 3.7e-07 59.7 73 39.7
CANSAT64G2559 Cannabis sativa HOM05D008880 ORTHO05D011235 4.8e-07 59.3 122 29.5
RcHm_v2.0_Chr6g0304521 Rosa chinensis HOM05D000002 ORTHO05D001134 4.8e-07 59.3 279 24.0
Dinv09648 Davidia involucrata HOM05D000002 ORTHO05D009184 6.3e-07 58.9 144 22.9
Thhalv10019716m.g Eutrema salsugineum HOM05D000002 ORTHO05D001544 6.3e-07 58.9 139 28.1
SHI25523 Sapria himalayana HOM05D000002 ORTHO05D001544 6.3e-07 58.9 142 28.2
THA.LOC104810636 Tarenaya hassleriana HOM05D000002 ORTHO05D001544 6.3e-07 58.9 157 28.7
CANSAT21G1096 Cannabis sativa HOM05D008880 ORTHO05D011235 8.2e-07 58.5 126 27.0
ECA240G4347 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.2e-07 58.5 266 24.1
CANSAT01G1740 Cannabis sativa HOM05D008880 ORTHO05D011235 1.1e-06 58.2 100 28.0
Ah.03g146900 Amaranthus hybridus HOM05D000002 ORTHO05D001134 1.4e-06 57.8 197 23.9
CANSAT64G2389 Cannabis sativa HOM05D008880 ORTHO05D011235 1.4e-06 57.8 137 23.4
ClCG05G000760 Citrullus lanatus HOM05D001889 ORTHO05D000001 1.4e-06 57.8 162 24.1
RcHm_v2.0_Chr1g0336961 Rosa chinensis HOM05D000002 ORTHO05D001134 1.8e-06 57.4 209 25.4
TWI38G0876 Tripterygium wilfordii HOM05D008880 ORTHO05D001544 2.4e-06 57.0 73 42.5
SHI25731 Sapria himalayana HOM05D000105 ORTHO05D001544 3.1e-06 56.6 149 27.5
MD15G1059300 Malus domestica HOM05D000002 ORTHO05D001134 4.1e-06 56.2 146 26.7
PSO198G0080 Papaver somniferum HOM05D000002 ORTHO05D001134 4.1e-06 56.2 152 25.7
C09p00940 Brassica napus HOM05D001889 ORTHO05D001853 5.3e-06 55.8 156 23.7
CANSAT64G2049 Cannabis sativa HOM05D008880 ORTHO05D011235 5.3e-06 55.8 78 30.8
Ca_23898_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 5.3e-06 55.8 253 21.7
Manes.03G074416 Manihot esculenta HOM05D000002 ORTHO05D001544 5.3e-06 55.8 123 32.5
RcHm_v2.0_Chr5g0070531 Rosa chinensis HOM05D000279 ORTHO05D000957 5.3e-06 55.8 139 27.3
TAR300G0001 Trochodendron aralioides HOM05D000002 ORTHO05D001544 5.3e-06 55.8 161 29.2
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.0e-06 55.5 269 23.0
CSS0043616 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 9.1e-06 55.1 255 22.0
CANSAT25G1515 Cannabis sativa HOM05D008880 ORTHO05D011235 9.1e-06 55.1 104 27.9


User provided reference genes

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