Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 2.6e-169 598.6 292 100.0
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 8.6e-165 583.6 292 97.9
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 1.3e-160 569.7 292 95.2
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 2.1e-158 562.4 292 93.8
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 6.2e-155 550.8 292 92.8
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 1.4e-151 539.7 292 89.0
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 9.6e-148 526.9 289 86.9
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 2.1e-147 525.8 290 86.9
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 1.4e-146 523.1 292 86.3
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 1.4e-146 523.1 290 84.8
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 1.8e-146 522.7 292 86.3
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 3.1e-146 521.9 292 85.6
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 4.0e-146 521.5 292 85.6
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 4.0e-146 521.5 292 86.0
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 5.3e-146 521.2 290 86.2
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 5.3e-146 521.2 290 85.2
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 6.9e-146 520.8 292 84.6
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 6.9e-146 520.8 290 85.2
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.2e-145 520.0 292 86.0
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 1.2e-145 520.0 292 86.6
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 2.6e-145 518.8 292 84.9
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 3.4e-145 518.5 292 84.6
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 3.4e-145 518.5 292 84.6
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 2.9e-144 515.4 292 83.9
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 2.9e-144 515.4 292 84.9
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 3.8e-144 515.0 292 84.6
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 4.9e-144 514.6 292 84.6
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 4.9e-144 514.6 292 84.2
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 6.4e-144 514.2 288 84.4
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 8.4e-144 513.8 292 82.9
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 1.1e-143 513.5 292 83.9
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 2.4e-143 512.3 290 84.5
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 3.2e-143 511.9 288 83.7
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 3.2e-143 511.9 288 83.7
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 4.2e-143 511.5 290 83.8
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 4.2e-143 511.5 294 84.7
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 5.5e-143 511.1 280 86.8
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 5.5e-143 511.1 290 83.4
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 9.3e-143 510.4 292 83.9
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 1.2e-142 510.0 292 82.9
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 1.6e-142 509.6 290 84.1
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 1.6e-142 509.6 290 83.1
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 1.6e-142 509.6 292 83.2
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 2.1e-142 509.2 288 83.0
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 2.7e-142 508.8 292 83.2
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 7.9e-142 507.3 292 82.9
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 7.9e-142 507.3 292 82.5
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 1.0e-141 506.9 292 82.5
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.0e-141 506.9 292 82.5
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 1.3e-141 506.5 288 83.0
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 1.3e-141 506.5 291 83.8
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 2.3e-141 505.8 289 83.7
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 2.3e-141 505.8 292 83.2
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 3.0e-141 505.4 290 83.8
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 3.0e-141 505.4 292 82.9
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 3.9e-141 505.0 292 82.9
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 3.9e-141 505.0 292 82.9
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 3.9e-141 505.0 292 82.2
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 5.1e-141 504.6 290 82.4
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 5.1e-141 504.6 290 83.4
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 5.1e-141 504.6 292 82.5
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 1.1e-140 503.4 288 81.9
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 4.3e-140 501.5 288 81.9
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 1.6e-139 499.6 288 81.6
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 2.8e-139 498.8 292 81.8
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 4.8e-139 498.0 290 82.4
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 1.4e-138 496.5 289 81.7
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 1.4e-138 496.5 321 75.7
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 1.8e-138 496.1 290 81.7
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 1.8e-138 496.1 290 81.7
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 1.8e-138 496.1 290 81.7
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 5.3e-138 494.6 292 81.2
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 1.2e-137 493.4 292 80.8
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 2.0e-137 492.7 292 80.5
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 2.6e-137 492.3 292 81.2
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 7.6e-137 490.7 292 80.1
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 1.3e-136 490.0 292 79.8
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 3.8e-136 488.4 290 78.6
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 6.5e-136 487.6 292 79.8
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.4e-135 486.5 292 80.5
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 1.9e-135 486.1 292 79.5
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 5.5e-135 484.6 290 79.3
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 2.1e-134 482.6 290 79.3
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 2.1e-134 482.6 291 79.4
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 2.7e-134 482.3 292 78.4
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 2.7e-134 482.3 285 82.1
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 3.5e-134 481.9 285 78.9
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 6.0e-134 481.1 272 84.9
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 7.9e-134 480.7 291 77.0
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.8e-133 479.6 290 78.6
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 2.5e-132 475.7 290 77.2
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 2.5e-132 475.7 290 77.2
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 4.3e-132 474.9 288 77.8
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 4.3e-132 474.9 288 77.8
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 1.6e-131 473.0 285 78.2
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 2.8e-131 472.2 291 78.4
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 4.8e-131 471.5 278 80.6
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 6.3e-131 471.1 289 76.5
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 1.4e-130 469.9 288 79.5
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 3.1e-130 468.8 289 77.2
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 3.4e-129 465.3 272 82.7
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 3.4e-129 465.3 274 81.8
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 3.4e-129 465.3 292 78.1
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 1.3e-128 463.4 292 77.7
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 2.2e-128 462.6 255 86.3
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 1.4e-127 459.9 313 74.1
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 1.2e-126 456.8 271 80.8
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 1.3e-125 453.4 294 73.8
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 1.5e-124 449.9 292 77.1
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 5.9e-121 438.0 285 73.0
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 2.9e-120 435.6 308 70.1
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 1.6e-118 429.9 286 71.7
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 6.7e-117 424.5 282 69.5
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 2.8e-115 419.1 271 75.6
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 7.7e-113 411.0 268 71.6
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 3.6e-110 402.1 271 69.4
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 6.3e-107 391.3 282 63.8
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 2.1e-102 376.3 223 80.7
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 1.7e-96 356.7 188 93.1
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 6.5e-96 354.8 321 59.8
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 2.9e-88 329.3 186 84.4
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 3.1e-82 309.3 291 54.0
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 9.2e-82 307.8 286 51.0
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 9.2e-82 307.8 192 79.2
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 1.1e-79 300.8 188 76.1
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 1.1e-79 300.8 295 52.2
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 1.7e-75 287.0 173 79.8
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 7.3e-71 271.6 290 46.9
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 7.1e-58 228.4 308 44.5
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 2.3e-56 223.4 164 67.7
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.2e-51 206.8 224 51.8
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.2e-49 201.1 221 51.6
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 5.1e-48 195.7 106 84.9
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 5.4e-42 175.6 101 83.2
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 9.3e-42 174.9 102 81.4
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 5.6e-39 165.6 97 81.4
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 2.0e-28 130.6 76 84.2
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.3e-23 113.2 166 40.4
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.0e-21 106.3 97 58.8
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 2.1e-09 67.4 51 62.7
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 5.1e-08 62.8 40 80.0


User provided reference genes

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