Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 1.1e-233 813.9 834 100.0
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 2.4e-199 699.9 847 92.6
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 3.9e-162 576.2 860 84.7
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 3.1e-159 566.6 727 98.3
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 4.5e-158 562.8 877 83.1
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 5.9e-142 509.2 843 82.4
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 3.8e-133 479.9 725 91.9
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 7.1e-79 299.7 779 76.0
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 5.1e-77 293.5 724 70.9
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 1.5e-76 292.0 800 73.6
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 2.4e-74 284.6 323 77.4
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 1.2e-73 282.3 698 80.4
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 1.0e-72 279.3 665 82.6
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.2e-72 278.1 694 81.7
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 2.1e-70 271.6 677 83.5
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 1.5e-68 265.4 347 64.3
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 7.4e-68 263.1 274 67.5
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 1.3e-67 262.3 715 75.0
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 6.3e-67 260.0 662 82.0
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 8.2e-67 259.6 662 81.9
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.4e-66 258.8 683 76.3
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.4e-66 258.8 301 75.1
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 4.1e-66 257.3 697 79.8
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 1.5e-65 255.4 805 72.9
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 1.7e-64 251.9 723 71.9
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 2.2e-64 251.5 661 81.1
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 1.4e-63 248.8 751 73.8
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 3.0e-61 241.1 289 75.4
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 1.6e-59 235.3 305 69.8
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 1.6e-59 235.3 728 75.5
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 1.6e-59 235.3 785 70.8
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.8e-58 231.9 709 77.4
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 4.1e-58 230.7 633 83.6
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 9.0e-58 229.6 681 80.0
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 1.2e-57 229.2 754 74.3
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 2.6e-57 228.0 180 62.2
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 1.0e-56 226.1 675 79.9
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.0e-56 226.1 749 72.9
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.0e-56 223.8 675 79.7
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 6.5e-56 223.4 709 77.4
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 8.5e-56 223.0 158 65.8
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 1.4e-55 222.2 307 58.0
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 4.2e-55 220.7 749 72.8
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 5.5e-55 220.3 704 75.7
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 9.4e-55 219.5 826 67.2
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 9.4e-55 219.5 711 75.7
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 2.7e-54 218.0 693 77.6
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 6.1e-54 216.9 748 72.6
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 1.8e-53 215.3 691 77.9
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 2.3e-53 214.9 206 56.8
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 2.3e-53 214.9 699 73.8
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 8.8e-53 213.0 110 92.7
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 1.5e-52 212.2 196 57.7
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 2.6e-52 211.5 661 80.0
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 2.6e-52 211.5 205 56.6
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 4.3e-52 210.7 194 54.6
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 9.7e-52 209.5 327 59.6
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 2.8e-51 208.0 203 56.7
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 8.2e-51 206.5 185 55.7
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.4e-50 205.7 185 55.7
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.8e-50 205.3 727 74.6
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 1.8e-50 205.3 727 74.6
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 1.8e-50 205.3 211 52.6
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 9.1e-50 203.0 667 77.4
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 2.0e-49 201.8 252 50.4
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 2.0e-49 201.8 271 46.1
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 3.4e-49 201.1 320 65.3
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 4.5e-49 200.7 194 56.7
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 5.9e-49 200.3 321 63.6
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 1.1e-47 196.1 317 64.4
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 1.4e-47 195.7 155 64.5
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 2.5e-47 194.9 335 61.2
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 2.5e-47 194.9 265 46.8
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 3.2e-47 194.5 339 63.1
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 2.1e-46 191.8 151 64.9
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 2.7e-46 191.4 187 57.8
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 2.7e-46 191.4 191 55.5
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 4.7e-46 190.7 194 54.1
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 6.1e-46 190.3 725 71.7
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 1.0e-45 189.5 184 57.6
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 1.0e-45 189.5 304 66.4
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 1.0e-45 189.5 184 57.6
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 2.3e-45 188.3 304 66.8
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 3.0e-45 188.0 195 54.4
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 5.2e-45 187.2 325 60.6
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 6.7e-45 186.8 722 72.3
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 6.7e-45 186.8 159 60.4
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 8.8e-45 186.4 742 71.7
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 8.8e-45 186.4 304 66.1
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 1.5e-44 185.7 310 65.5
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 1.5e-44 185.7 321 61.7
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 4.4e-44 184.1 266 42.5
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 5.7e-44 183.7 678 61.4
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 6.3e-43 180.3 284 43.3
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 1.1e-42 179.5 319 61.8
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 4.1e-42 177.6 243 47.3
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 7.0e-42 176.8 173 54.3
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 7.0e-42 176.8 127 67.7
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 2.0e-41 175.3 278 64.0
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 2.6e-41 174.9 325 58.5
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 7.7e-41 173.3 283 62.2
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 2.2e-40 171.8 162 55.6
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 2.2e-40 171.8 187 48.1
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 5.0e-40 170.6 177 53.7
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 1.5e-39 169.1 249 44.2
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 1.6e-38 165.6 642 78.8
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 3.6e-38 164.5 117 67.5
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 3.7e-35 154.5 102 69.6
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 4.8e-35 154.1 107 66.4
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.9e-33 147.1 100 69.0
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 5.9e-33 147.1 109 66.1
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 7.7e-33 146.7 102 64.7
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 1.7e-32 145.6 106 66.0
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 1.4e-29 136.0 125 54.4
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.0e-29 134.8 107 60.7
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 2.0e-25 122.1 101 56.4
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 3.2e-23 114.8 77 67.5
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 4.2e-23 114.4 106 50.9
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 7.2e-23 113.6 101 52.5
CAN.G328.9 Capsicum annuum HOM05D005337 ORTHO05D006567 1.5e-20 105.9 152 47.4
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 2.6e-20 105.1 76 65.8
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 3.4e-20 104.8 83 57.8
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 9.8e-20 103.2 82 58.5
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 4.1e-18 97.8 109 45.0
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 1.3e-16 92.8 95 46.3
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 5.6e-15 87.4 83 50.6
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 2.3e-13 82.0 109 42.2
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 8.3e-11 73.6 61 60.7
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 1.1e-10 73.2 58 55.2
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 1.8e-10 72.4 52 63.5
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 2.4e-10 72.0 141 29.8
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 1.2e-09 69.7 50 68.0
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 2.7e-09 68.6 147 29.3
Mapoly0096s0019 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.5e-09 68.2 146 29.5
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 5.9e-09 67.4 133 30.1
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 1.3e-08 66.2 138 29.0
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 2.3e-08 65.5 133 33.8
Rhsim05G0126600 Rhododendron simsii HOM05D005973 ORTHO05D007285 6.6e-08 63.9 138 28.3
CANSAT80G0799 Cannabis sativa HOM05D005973 ORTHO05D007285 1.1e-07 63.2 138 28.3
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 1.1e-07 63.2 137 27.7
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 1.5e-07 62.8 133 29.3
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 1.5e-07 62.8 168 25.0
Cfa002200 Carpinus fangiana HOM05D005973 ORTHO05D007285 2.5e-07 62.0 133 30.1
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 2.5e-07 62.0 135 26.7
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 4.3e-07 61.2 147 25.9
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 5.6e-07 60.8 134 30.6
Hma1.2p1_0579F.1_g182710 Hydrangea macrophylla HOM05D005973 ORTHO05D007285 5.6e-07 60.8 133 28.6
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 5.6e-07 60.8 147 25.2
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 5.6e-07 60.8 137 26.3
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 9.5e-07 60.1 137 27.0
Lsat_1_v5_gn_1_100901 Lactuca sativa HOM05D005973 ORTHO05D007285 9.5e-07 60.1 133 28.6
BcaNung04156 Brassica carinata HOM05D005973 ORTHO05D007285 1.2e-06 59.7 142 31.0
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 1.2e-06 59.7 122 31.1
BcaB03g13836 Brassica carinata HOM05D005337 ORTHO05D006567 2.1e-06 58.9 116 38.8
CSS0029678 Camellia sinensis var. sinensis HOM05D005973 ORTHO05D007285 2.1e-06 58.9 133 28.6
CAN.G410.36 Capsicum annuum HOM05D005973 ORTHO05D007285 2.1e-06 58.9 179 26.3
Eucgr.C02463 Eucalyptus grandis HOM05D005973 ORTHO05D007285 2.1e-06 58.9 136 28.7
Manes.05G118900 Manihot esculenta HOM05D005973 ORTHO05D007285 2.1e-06 58.9 133 27.8
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 2.1e-06 58.9 181 24.3
PGSC0003DMG400013180 Solanum tuberosum HOM05D004079 ORTHO05D005437 2.1e-06 58.9 125 29.6
TAR623G1677 Trochodendron aralioides HOM05D005973 ORTHO05D007285 2.1e-06 58.9 147 25.9
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 2.8e-06 58.5 147 24.5
CSS0008088 Camellia sinensis var. sinensis HOM05D005973 ORTHO05D007285 2.8e-06 58.5 133 28.6
ECA248G3068 Erigeron canadensis HOM05D005973 ORTHO05D007285 2.8e-06 58.5 133 27.8
DCAR_021786 Daucus carota HOM05D000424 ORTHO05D002854 3.6e-06 58.2 159 25.8
PSO700G0272 Papaver somniferum HOM05D002737 ORTHO05D009499 3.6e-06 58.2 147 26.5
Aa31LG9G8720 Aethionema arabicum HOM05D005973 ORTHO05D007285 4.7e-06 57.8 138 27.5
Ciclev10030824m.g Citrus clementina HOM05D005973 ORTHO05D007285 4.7e-06 57.8 133 27.8
Sopen03g032430 Solanum pennellii HOM05D004079 ORTHO05D005437 4.7e-06 57.8 125 29.6
AagrBONN_evm.TU.Sc2ySwM_344.4462 Anthoceros agrestis HOM05D004079 ORTHO05D000355 6.2e-06 57.4 214 23.4
PSO761G0258 Papaver somniferum HOM05D007830 ORTHO05D009947 6.2e-06 57.4 128 24.2
CARHR227290 Cardamine hirsuta HOM05D005973 ORTHO05D007285 8.0e-06 57.0 138 27.5
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 8.0e-06 57.0 147 25.9


User provided reference genes

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