Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g008060 Solanum pennellii HOM05D000610 ORTHO05D012869 2.6e-49 198.4 97 100.0
PGSC0003DMG401024195 Solanum tuberosum HOM05D000610 ORTHO05D012869 1.3e-16 89.7 64 73.4
Solyc03g113070.4 Solanum lycopersicum HOM05D000610 ORTHO05D002583 2.5e-15 85.5 49 83.7
Sopen03g032150 Solanum pennellii HOM05D000610 ORTHO05D002583 2.5e-15 85.5 49 83.7
CAN.G1711.17 Capsicum annuum HOM05D000610 ORTHO05D002583 5.5e-15 84.3 49 83.7
PGSC0003DMG402018143 Solanum tuberosum HOM05D000610 ORTHO05D002583 5.5e-15 84.3 49 83.7
Nitab4.5_0004785g0020 Nicotiana tabacum HOM05D000610 ORTHO05D002583 4.6e-14 81.3 49 75.5
Nitab4.5_0000785g0100 Nicotiana tabacum HOM05D000610 ORTHO05D002583 3.0e-13 78.6 49 73.5
Peaxi162Scf00009g00227 Petunia axillaris HOM05D000610 ORTHO05D002583 4.3e-12 74.7 48 70.8
A03p47340 Brassica napus HOM05D000610 ORTHO05D002583 8.2e-11 70.5 64 51.6
A03p47410 Brassica napus HOM05D000610 ORTHO05D002583 8.2e-11 70.5 64 51.6
AT5G61730 Arabidopsis thaliana HOM05D000610 ORTHO05D002583 5.3e-10 67.8 64 53.1
CARHR156410 Cardamine hirsuta HOM05D000610 ORTHO05D002583 6.9e-10 67.4 63 52.4
BcaC06g33250 Brassica carinata HOM05D000610 ORTHO05D002583 1.2e-09 66.6 64 50.0
BolC7t45066H Brassica oleracea HOM05D000610 ORTHO05D002583 1.2e-09 66.6 64 50.0
AL8G38490 Arabidopsis lyrata HOM05D000610 ORTHO05D002583 1.5e-09 66.2 64 53.1
Carub.0008s2239 Capsella rubella HOM05D000610 ORTHO05D002583 1.5e-09 66.2 64 54.7
Carub.0008s2242 Capsella rubella HOM05D000610 ORTHO05D002583 1.5e-09 66.2 64 54.7
Carub.0005s1386 Capsella rubella HOM05D000610 ORTHO05D002583 2.0e-09 65.9 63 54.0
FAN21G4023 Fragaria x ananassa HOM05D000610 ORTHO05D002583 2.0e-09 65.9 55 56.4
Aa31LG4G16420 Aethionema arabicum HOM05D000610 ORTHO05D002583 3.4e-09 65.1 63 54.0
FAN16G3653 Fragaria x ananassa HOM05D000610 ORTHO05D002583 3.4e-09 65.1 55 56.4
CSS0031516 Camellia sinensis var. sinensis HOM05D000610 ORTHO05D002583 4.5e-09 64.7 47 61.7
Aqoxy3G00716 Aquilegia oxysepala HOM05D000610 ORTHO05D002583 5.9e-09 64.3 63 50.8
BraA03t13860Z Brassica rapa HOM05D000610 ORTHO05D002583 5.9e-09 64.3 64 50.0
TAR629G0188 Trochodendron aralioides HOM05D000610 ORTHO05D002583 5.9e-09 64.3 63 52.4
TAR629G0472 Trochodendron aralioides HOM05D000610 ORTHO05D002583 5.9e-09 64.3 63 52.4
TAR629G3184 Trochodendron aralioides HOM05D002216 ORTHO05D002583 5.9e-09 64.3 63 52.4
BcaB01g00884 Brassica carinata HOM05D000610 ORTHO05D002583 7.6e-09 63.9 63 52.4
A01p27880 Brassica napus HOM05D000610 ORTHO05D002583 7.6e-09 63.9 64 50.0
COL.COLO4_14040 Corchorus olitorius HOM05D000610 ORTHO05D002583 7.6e-09 63.9 48 56.2
Nn4g23079 Nelumbo nucifera HOM05D000610 ORTHO05D002583 7.6e-09 63.9 63 54.0
Oeu006481.1 Olea europaea HOM05D000610 ORTHO05D002583 7.6e-09 63.9 48 58.3
BraA06t25071Z Brassica rapa HOM05D000610 ORTHO05D002583 1.0e-08 63.5 64 50.0
CSS0033185 Camellia sinensis var. sinensis HOM05D000610 ORTHO05D002583 1.0e-08 63.5 48 58.3
Cpa.g.sc388.1 Carica papaya HOM05D000610 ORTHO05D002583 1.0e-08 63.5 48 62.5
Hma1.2p1_1617F.1_g293850 Hydrangea macrophylla HOM05D000610 ORTHO05D002583 1.0e-08 63.5 48 56.2
Oeu060783.1 Olea europaea HOM05D000610 ORTHO05D002583 1.0e-08 63.5 48 60.4
Sp2g24910 Schrenkiella parvula HOM05D000610 ORTHO05D002583 1.0e-08 63.5 49 53.1
TWI81G0417 Tripterygium wilfordii HOM05D000610 ORTHO05D002583 1.0e-08 63.5 63 50.8
CSS0025360 Camellia sinensis var. sinensis HOM05D000610 ORTHO05D002583 1.3e-08 63.2 48 58.3
RcHm_v2.0_Chr5g0061021 Rosa chinensis HOM05D000610 ORTHO05D002583 1.3e-08 63.2 55 56.4
TAR622G0835 Trochodendron aralioides HOM05D000610 ORTHO05D002583 1.3e-08 63.2 63 52.4
TAR729G0003 Trochodendron aralioides HOM05D000610 ORTHO05D002583 1.3e-08 63.2 63 52.4
AT3G47730 Arabidopsis thaliana HOM05D000610 ORTHO05D002583 1.7e-08 62.8 63 52.4
BcaB05g23069 Brassica carinata HOM05D000610 ORTHO05D002583 1.7e-08 62.8 48 58.3
BcaC09g49537 Brassica carinata HOM05D000610 ORTHO05D002583 1.7e-08 62.8 64 48.4
A06p19880 Brassica napus HOM05D000610 ORTHO05D002583 1.7e-08 62.8 69 50.7
C01p35440 Brassica napus HOM05D000610 ORTHO05D002583 1.7e-08 62.8 64 48.4
BolC1t03501H Brassica oleracea HOM05D000610 ORTHO05D002583 1.7e-08 62.8 64 48.4
FvH4_3g33610 Fragaria vesca HOM05D000610 ORTHO05D002583 1.7e-08 62.8 55 56.4
FAN11G2326 Fragaria x ananassa HOM05D000610 ORTHO05D002583 1.7e-08 62.8 55 56.4
Sp5g14190 Schrenkiella parvula HOM05D000610 ORTHO05D002583 1.7e-08 62.8 63 52.4
AL5G27000 Arabidopsis lyrata HOM05D000610 ORTHO05D002583 2.2e-08 62.4 63 50.8
BcaC06g33132 Brassica carinata HOM05D000610 ORTHO05D002583 2.2e-08 62.4 64 46.9
BolC3t19492H Brassica oleracea HOM05D000610 ORTHO05D002583 2.2e-08 62.4 64 50.0
Sed0000208 Sechium edule HOM05D000610 ORTHO05D002583 2.2e-08 62.4 48 58.3
MSTRG.11393 Avicennia marina HOM05D000610 ORTHO05D002583 2.9e-08 62.0 63 47.6
C03p71950 Brassica napus HOM05D000610 ORTHO05D002583 2.9e-08 62.0 64 48.4
BcaC01g01779 Brassica carinata HOM05D000610 ORTHO05D002583 3.8e-08 61.6 63 49.2
Haze_07360 Corylus avellana HOM05D000610 ORTHO05D002583 3.8e-08 61.6 48 60.4
Thhalv10023241m.g Eutrema salsugineum HOM05D000610 ORTHO05D002583 5.0e-08 61.2 53 54.7
Prupe.6G093200 Prunus persica HOM05D000610 ORTHO05D002583 5.0e-08 61.2 48 54.2
TWI60G1613 Tripterygium wilfordii HOM05D000610 ORTHO05D002583 5.0e-08 61.2 63 49.2
Ciclev10018720m.g Citrus clementina HOM05D000610 ORTHO05D002583 6.5e-08 60.8 63 52.4
QL10p016023 Quercus lobata HOM05D000610 ORTHO05D002583 6.5e-08 60.8 48 58.3
SGA_v2.0_scaffold56G20043 Striga asiatica HOM05D000610 ORTHO05D002583 8.5e-08 60.5 56 48.2
BcaC06g33252 Brassica carinata HOM05D000610 ORTHO05D002583 1.1e-07 60.1 49 53.1
BcaC06g33253 Brassica carinata HOM05D000610 ORTHO05D002583 1.1e-07 60.1 49 53.1
A03p47320 Brassica napus HOM05D000610 ORTHO05D002583 1.1e-07 60.1 49 53.1
A03p47380 Brassica napus HOM05D000610 ORTHO05D002583 1.1e-07 60.1 49 53.1
BolC7t45064H Brassica oleracea HOM05D000610 ORTHO05D002583 1.1e-07 60.1 49 53.1
BraA03t13858Z Brassica rapa HOM05D000610 ORTHO05D002583 1.1e-07 60.1 49 53.1
CARHR275490 Cardamine hirsuta HOM05D000610 ORTHO05D002583 1.1e-07 60.1 68 48.5
ECA247G0979 Erigeron canadensis HOM05D000610 ORTHO05D002583 1.1e-07 60.1 49 55.1
Migut.I00139 Erythranthe guttata HOM05D000610 ORTHO05D002583 1.1e-07 60.1 48 52.1
Lsat_1_v5_gn_1_10641 Lactuca sativa HOM05D000610 ORTHO05D002583 1.1e-07 60.1 49 57.1
Lsat_1_v5_gn_1_11021 Lactuca sativa HOM05D000610 ORTHO05D002583 1.1e-07 60.1 49 57.1
MD11G1124700 Malus domestica HOM05D000610 ORTHO05D002583 1.1e-07 60.1 48 56.2
Prupe.5G229500 Prunus persica HOM05D000610 ORTHO05D002583 1.1e-07 60.1 48 56.2
GSVIVG01008042001 Vitis vinifera HOM05D000610 ORTHO05D002583 1.1e-07 60.1 63 47.6
Actinidia19053 Actinidia chinensis HOM05D000610 ORTHO05D002583 1.4e-07 59.7 49 53.1
Aa31LG11G1770 Aethionema arabicum HOM05D000610 ORTHO05D002583 1.4e-07 59.7 49 51.0
A01p27930 Brassica napus HOM05D000610 ORTHO05D002583 1.4e-07 59.7 49 53.1
BraA01t02930Z Brassica rapa HOM05D000610 ORTHO05D002583 1.4e-07 59.7 49 53.1
CANSAT80G0453 Cannabis sativa HOM05D000610 ORTHO05D002583 1.9e-07 59.3 48 54.2
MELO3C017159.2 Cucumis melo HOM05D000610 ORTHO05D002583 1.9e-07 59.3 48 56.2
MD00G1160200 Malus domestica HOM05D000610 ORTHO05D002583 1.9e-07 59.3 48 52.1
RcHm_v2.0_Chr7g0178841 Rosa chinensis HOM05D000610 ORTHO05D002583 1.9e-07 59.3 63 49.2
Sp2g24930 Schrenkiella parvula HOM05D000610 ORTHO05D002583 1.9e-07 59.3 49 51.0
Cfa018974 Carpinus fangiana HOM05D000610 ORTHO05D002583 2.5e-07 58.9 47 59.6
CiPaw.11G039900 Carya illinoinensis HOM05D000610 ORTHO05D002583 3.2e-07 58.5 48 54.2
CDE05G2047 Ceratophyllum demersum HOM05D000610 ORTHO05D002583 3.2e-07 58.5 56 51.8
ClCG06G016330 Citrullus lanatus HOM05D000610 ORTHO05D002583 3.2e-07 58.5 48 56.2
QL10p015990 Quercus lobata HOM05D000610 ORTHO05D002583 3.2e-07 58.5 48 56.2
Thecc.03G081700 Theobroma cacao HOM05D000610 ORTHO05D002583 3.2e-07 58.5 48 54.2
BcaC06g33135 Brassica carinata HOM05D000610 ORTHO05D002583 4.2e-07 58.2 49 53.1
BcaNung06541 Brassica carinata HOM05D000610 ORTHO05D002583 4.2e-07 58.2 49 53.1
Lj5C113T8 Lonicera japonica HOM05D000610 ORTHO05D002583 4.2e-07 58.2 48 56.2
Potri.012G069800 Populus trichocarpa HOM05D000610 ORTHO05D002583 4.2e-07 58.2 48 52.1
THA.LOC104819436 Tarenaya hassleriana HOM05D000610 ORTHO05D002583 4.2e-07 58.2 63 52.4
Cc04_g17210 Coffea canephora HOM05D000610 ORTHO05D002583 5.5e-07 57.8 48 58.3
Duzib205G1514 Durio zibethinus HOM05D000610 ORTHO05D002583 5.5e-07 57.8 53 52.8
Lalb_Chr08g0235871 Lupinus albus HOM05D000610 ORTHO05D002583 5.5e-07 57.8 53 58.5
Sc06g0010160 Simmondsia chinensis HOM05D000610 ORTHO05D002583 5.5e-07 57.8 63 47.6
A01p27830 Brassica napus HOM05D000610 ORTHO05D002583 7.2e-07 57.4 49 51.0
ECA247G0905 Erigeron canadensis HOM05D000610 ORTHO05D002583 7.2e-07 57.4 49 53.1
FAN18G0774 Fragaria x ananassa HOM05D000610 ORTHO05D002583 7.2e-07 57.4 63 49.2
BcaB07g31164 Brassica carinata HOM05D000610 ORTHO05D002583 9.3e-07 57.0 49 51.0
HanXRQChr02g0043111 Helianthus annuus HOM05D000610 ORTHO05D002583 9.3e-07 57.0 48 54.2
AL8G38410 Arabidopsis lyrata HOM05D000610 ORTHO05D002583 1.2e-06 56.6 49 55.1
CiPaw.12G015600 Carya illinoinensis HOM05D000610 ORTHO05D002583 1.2e-06 56.6 55 52.7
Lj1g0024986 Lotus japonicus HOM05D000610 ORTHO05D002583 1.2e-06 56.6 56 51.8
MBI01_g12914_MAGBIO Magnolia biondii HOM05D000610 ORTHO05D002583 1.2e-06 56.6 48 50.0
vmacro16563 Vaccinium macrocarpon HOM05D000610 ORTHO05D002583 1.2e-06 56.6 48 50.0
FvH4_5g17010 Fragaria vesca HOM05D000610 ORTHO05D002583 1.6e-06 56.2 63 49.2
Aqoxy3G04276 Aquilegia oxysepala HOM05D000610 ORTHO05D002583 2.1e-06 55.8 67 47.8
Carub.0172s0001 Capsella rubella HOM05D000610 ORTHO05D002583 2.1e-06 55.8 49 53.1
FAN08G1292 Fragaria x ananassa HOM05D000610 ORTHO05D002583 2.1e-06 55.8 63 49.2
FAN13G2733 Fragaria x ananassa HOM05D000610 ORTHO05D002583 2.1e-06 55.8 63 49.2
Glyma.06G191300 Glycine max HOM05D000610 ORTHO05D002583 2.1e-06 55.8 48 54.2
Gorai.007G035900 Gossypium raimondii HOM05D000610 ORTHO05D002583 2.1e-06 55.8 48 52.1
Dinv38679 Davidia involucrata HOM05D000610 ORTHO05D002583 2.7e-06 55.5 48 54.2
Psat0s3007g0040 Pisum sativum HOM05D000610 ORTHO05D002583 2.7e-06 55.5 49 57.1
PGR044G0597 Punica granatum HOM05D000610 ORTHO05D002583 2.7e-06 55.5 48 50.0
Atru.chr9.2298_Atru.chr9.2299 Acer truncatum HOM05D000610 ORTHO05D002583 3.6e-06 55.1 48 52.1
CDE05G0896 Ceratophyllum demersum HOM05D000610 ORTHO05D002583 3.6e-06 55.1 55 50.9
Gohir.D11G033100 Gossypium hirsutum HOM05D000610 ORTHO05D002583 3.6e-06 55.1 48 52.1
Medtr3g099990 Medicago truncatula HOM05D000610 ORTHO05D002583 3.6e-06 55.1 49 53.1
PSO478G2242 Papaver somniferum HOM05D000610 ORTHO05D002583 3.6e-06 55.1 48 47.9
SalBow5G0863 Salvia bowleyana HOM05D000610 ORTHO05D002583 3.6e-06 55.1 48 52.1
SalBow5G2891 Salvia bowleyana HOM05D000610 ORTHO05D002583 3.6e-06 55.1 48 52.1
Actinidia34983 Actinidia chinensis HOM05D000610 ORTHO05D002583 4.6e-06 54.7 48 52.1
Gohir.A11G029711 Gossypium hirsutum HOM05D000610 ORTHO05D002583 4.6e-06 54.7 47 53.2
QL10p016072 Quercus lobata HOM05D000610 ORTHO05D002583 4.6e-06 54.7 49 51.0
QL10p016116 Quercus lobata HOM05D000610 ORTHO05D002583 4.6e-06 54.7 49 51.0
QL93p0043_0065 Quercus lobata HOM05D000610 ORTHO05D002583 4.6e-06 54.7 49 51.0
AUR62024982 Chenopodium quinoa HOM05D000610 ORTHO05D002583 6.1e-06 54.3 48 52.1
DCAR_021533 Daucus carota HOM05D000610 ORTHO05D002583 6.1e-06 54.3 48 54.2
Eucgr.K02454 Eucalyptus grandis HOM05D000610 ORTHO05D002583 6.1e-06 54.3 48 56.2
Sabra12G0049700 Salix brachista HOM05D000610 ORTHO05D002583 6.1e-06 54.3 53 49.1
VMungo0945G0001 Vigna mungo HOM05D000610 ORTHO05D002583 6.1e-06 54.3 49 51.0
Manes.06G095200 Manihot esculenta HOM05D000610 ORTHO05D002583 7.9e-06 53.9 63 46.0
Nitab4.5_0000269g0090 Nicotiana tabacum HOM05D000610 ORTHO05D002583 7.9e-06 53.9 48 56.2


User provided reference genes

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