Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 1.1e-119 433.3 220 100.0
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 4.3e-116 421.4 220 97.3
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 9.9e-113 410.2 220 94.5
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 1.3e-101 373.2 220 87.7
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 5.1e-101 371.3 220 85.9
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 1.2e-94 350.1 264 70.1
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 1.5e-89 333.2 216 75.0
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 9.9e-89 330.5 216 74.1
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 2.2e-88 329.3 220 78.6
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 4.9e-88 328.2 217 74.2
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 8.4e-88 327.4 222 73.0
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 1.1e-87 327.0 216 73.1
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 1.1e-87 327.0 216 74.1
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 3.2e-87 325.5 216 71.8
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 5.5e-87 324.7 216 72.2
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 7.1e-87 324.3 217 73.7
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 1.6e-86 323.2 216 73.1
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.1e-86 322.8 220 73.2
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 2.7e-86 322.4 216 72.2
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 3.5e-86 322.0 213 73.7
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 7.9e-86 320.9 215 73.0
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 1.0e-85 320.5 216 71.3
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 2.3e-85 319.3 216 71.8
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 2.3e-85 319.3 216 70.8
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 3.0e-85 318.9 216 70.4
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 3.0e-85 318.9 224 70.1
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 3.0e-85 318.9 215 73.0
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 3.0e-85 318.9 222 72.1
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 5.1e-85 318.2 216 70.8
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 6.7e-85 317.8 216 72.2
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 8.7e-85 317.4 218 68.8
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 1.1e-84 317.0 216 73.6
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 1.5e-84 316.6 222 71.2
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 1.9e-84 316.2 216 69.9
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 1.9e-84 316.2 216 70.8
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.5e-84 315.8 220 72.7
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 3.3e-84 315.5 215 71.6
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 3.3e-84 315.5 216 70.8
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 3.3e-84 315.5 214 73.4
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 5.6e-84 314.7 216 70.8
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 5.6e-84 314.7 216 71.8
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 9.6e-84 313.9 223 69.1
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 9.6e-84 313.9 216 69.9
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.3e-83 313.5 223 70.9
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 1.3e-83 313.5 216 70.8
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.6e-83 313.2 223 70.4
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 2.8e-83 312.4 217 70.5
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 2.8e-83 312.4 216 70.4
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 4.8e-83 311.6 216 72.2
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 4.8e-83 311.6 217 71.0
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 1.1e-82 310.5 217 69.6
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.1e-82 310.5 217 70.0
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 1.4e-82 310.1 217 69.6
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 1.8e-82 309.7 246 63.4
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 4.0e-82 308.5 217 69.6
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 5.3e-82 308.1 217 69.1
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 6.9e-82 307.8 217 69.6
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 9.0e-82 307.4 215 70.7
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 9.0e-82 307.4 223 70.0
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 1.5e-81 306.6 219 68.9
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 2.0e-81 306.2 220 68.2
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 3.4e-81 305.4 217 70.5
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 4.5e-81 305.1 219 69.4
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 5.8e-81 304.7 218 69.7
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 5.8e-81 304.7 226 66.8
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 7.6e-81 304.3 226 68.1
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 1.0e-80 303.9 216 70.8
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 1.0e-80 303.9 216 69.9
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.0e-80 303.9 215 68.8
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 1.3e-80 303.5 217 70.5
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 1.7e-80 303.1 205 70.7
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.7e-80 303.1 217 68.7
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 3.8e-80 302.0 220 67.3
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 3.8e-80 302.0 220 67.3
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 3.8e-80 302.0 220 67.3
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 3.8e-80 302.0 226 65.9
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.8e-80 302.0 216 69.9
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 4.9e-80 301.6 220 68.2
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 4.9e-80 301.6 216 66.7
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 6.5e-80 301.2 219 68.0
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 1.4e-79 300.1 219 67.6
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 2.5e-79 299.3 220 67.3
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 2.5e-79 299.3 220 67.3
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 4.2e-79 298.5 217 68.2
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 4.2e-79 298.5 236 63.1
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 5.5e-79 298.1 217 67.3
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 7.1e-79 297.7 220 66.8
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 7.1e-79 297.7 217 67.3
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 1.2e-78 297.0 219 65.3
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 1.2e-78 297.0 220 69.1
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 3.5e-78 295.4 220 67.3
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 1.3e-77 293.5 224 64.7
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 5.1e-77 291.6 217 67.3
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 5.1e-77 291.6 209 71.3
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 5.1e-77 291.6 256 59.4
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 5.7e-76 288.1 229 63.8
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.3e-75 287.0 242 62.8
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 4.8e-75 285.0 249 60.2
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 8.2e-75 284.3 213 63.8
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 1.8e-74 283.1 216 64.8
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 2.4e-74 282.7 218 63.8
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 4.1e-74 282.0 224 64.3
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 6.9e-74 281.2 200 67.5
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 1.3e-72 276.9 220 62.3
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 2.2e-72 276.2 188 71.3
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 2.2e-72 276.2 215 60.5
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.9e-72 275.8 158 81.6
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 1.4e-71 273.5 227 59.9
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 4.2e-71 271.9 209 67.5
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 1.3e-69 266.9 215 60.5
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.8e-69 266.5 205 62.9
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 1.1e-68 263.8 219 62.1
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 5.3e-66 255.0 183 69.4
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.5e-63 246.1 194 64.9
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 1.4e-61 240.4 190 63.2
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 9.7e-60 234.2 239 51.0
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 9.1e-58 227.6 219 54.3
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.9e-55 219.9 131 76.3
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 8.8e-53 211.1 219 53.4
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 2.6e-52 209.5 120 79.2
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 2.6e-49 199.5 114 80.7
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 4.5e-49 198.7 238 45.8
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 4.2e-47 192.2 206 50.5
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 1.4e-45 187.2 249 42.2
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.4e-42 177.2 172 55.8
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 6.1e-38 161.8 100 73.0
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 1.3e-35 154.1 252 36.1
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 1.7e-32 143.7 178 48.3
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 6.3e-27 125.2 245 35.9
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 4.4e-12 75.9 42 81.0
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 1.3e-11 74.3 84 51.2
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 7.0e-10 68.6 44 72.7
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.0e-08 64.7 36 75.0
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.3e-08 64.3 43 67.4
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 5.0e-08 62.4 207 29.0
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 9.5e-07 58.2 27 100.0
Cpa.g.sc246.8 Carica papaya HOM05D005618 ORTHO05D118306 4.7e-06 55.8 40 70.0


User provided reference genes

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