Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 2.0e-30 135.2 71 100.0
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 2.2e-29 131.7 71 97.2
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 1.2e-16 89.4 70 67.1
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 2.1e-16 88.6 70 67.1
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 2.2e-13 78.6 69 59.4
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 9.2e-12 73.2 58 65.5
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 1.6e-11 72.4 58 65.5
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 2.1e-11 72.0 58 63.8
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 2.7e-11 71.6 69 53.6
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 2.7e-11 71.6 69 56.5
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 3.5e-11 71.2 66 62.1
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 7.8e-11 70.1 67 59.7
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 7.8e-11 70.1 71 54.9
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 7.8e-11 70.1 67 59.7
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 1.0e-10 69.7 67 56.7
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.0e-10 69.7 67 56.7
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 1.3e-10 69.3 62 58.1
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 2.3e-10 68.6 67 58.2
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 2.3e-10 68.6 69 53.6
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 3.0e-10 68.2 65 58.5
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 3.0e-10 68.2 66 56.1
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 3.9e-10 67.8 68 52.9
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 5.1e-10 67.4 67 58.2
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 6.6e-10 67.0 69 53.6
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 8.6e-10 66.6 70 51.4
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 8.6e-10 66.6 69 52.2
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 1.1e-09 66.2 67 56.7
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 1.1e-09 66.2 67 56.7
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 1.1e-09 66.2 67 56.7
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 1.1e-09 66.2 67 56.7
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 1.5e-09 65.9 69 50.7
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 1.5e-09 65.9 68 54.4
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 2.5e-09 65.1 67 55.2
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 2.5e-09 65.1 69 52.2
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 2.5e-09 65.1 61 59.0
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 4.3e-09 64.3 67 55.2
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 4.3e-09 64.3 71 50.7
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 5.6e-09 63.9 67 55.2
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 9.5e-09 63.2 67 52.2
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 9.5e-09 63.2 98 41.8
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 9.5e-09 63.2 98 41.8
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 1.2e-08 62.8 64 56.2
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 2.1e-08 62.0 69 47.8
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 2.1e-08 62.0 67 55.2
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 3.6e-08 61.2 67 53.7
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 3.6e-08 61.2 63 55.6
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 4.7e-08 60.8 69 49.3
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 4.7e-08 60.8 71 47.9
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 8.1e-08 60.1 70 47.1
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 1.1e-07 59.7 68 47.1
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 1.4e-07 59.3 65 52.3
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 1.4e-07 59.3 70 48.6
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 1.8e-07 58.9 66 50.0
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 2.4e-07 58.5 71 47.9
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 3.1e-07 58.2 66 45.5
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 3.1e-07 58.2 70 47.1
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 6.8e-07 57.0 62 50.0
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 6.8e-07 57.0 67 50.7
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 8.9e-07 56.6 64 50.0
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 8.9e-07 56.6 56 60.7
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 1.2e-06 56.2 63 47.6
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 2.6e-06 55.1 69 40.6
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 2.6e-06 55.1 57 49.1
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 2.6e-06 55.1 63 47.6
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 3.4e-06 54.7 70 44.3
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 3.4e-06 54.7 57 52.6
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 4.4e-06 54.3 70 44.3
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 4.4e-06 54.3 69 43.5
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 5.8e-06 53.9 66 48.5
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 5.8e-06 53.9 71 45.1
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 7.6e-06 53.5 71 45.1
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 7.6e-06 53.5 69 43.5
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 7.6e-06 53.5 66 43.9
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 9.9e-06 53.1 64 45.3


User provided reference genes

Program Settings