Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 2.8e-142 508.8 297 100.0
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 2.4e-130 469.2 305 90.5
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 8.3e-123 444.1 283 96.1
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.9e-119 433.0 304 84.5
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 3.1e-117 425.6 298 80.9
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 1.1e-111 407.1 306 78.4
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.1e-110 402.9 298 78.2
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.1e-110 402.9 296 74.7
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.8e-109 399.8 305 79.7
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 3.1e-109 399.1 309 74.8
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 6.8e-109 397.9 308 75.0
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 8.9e-109 397.5 297 80.5
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.2e-108 397.1 308 78.2
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.0e-108 396.4 301 81.1
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 4.4e-108 395.2 309 72.5
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 5.8e-108 394.8 297 78.5
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.3e-107 393.7 312 77.2
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.2e-107 392.9 310 76.8
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 2.2e-107 392.9 308 74.0
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 2.2e-107 392.9 309 76.4
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 4.9e-107 391.7 308 71.1
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 6.4e-107 391.3 309 77.3
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 1.9e-106 389.8 309 77.0
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 3.2e-106 389.0 307 76.9
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 4.2e-106 388.7 308 65.3
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 7.1e-106 387.9 321 70.7
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 7.1e-106 387.9 299 77.3
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 4.6e-105 385.2 309 76.4
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 1.0e-104 384.0 306 74.8
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 3.0e-104 382.5 299 74.2
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 3.9e-104 382.1 308 75.6
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 5.1e-104 381.7 309 77.0
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 5.1e-104 381.7 309 73.8
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 8.7e-104 380.9 308 74.0
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 3.3e-103 379.0 307 72.3
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 3.3e-103 379.0 307 71.7
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 5.6e-103 378.3 297 66.7
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 7.3e-103 377.9 278 83.8
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 1.2e-102 377.1 298 72.8
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.2e-102 377.1 309 64.1
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 1.6e-102 376.7 308 76.9
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 2.8e-102 375.9 296 65.9
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 8.1e-102 374.4 309 62.5
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 8.1e-102 374.4 309 70.6
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.4e-101 373.6 313 62.0
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 5.3e-101 371.7 306 73.2
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 5.3e-101 371.7 299 63.2
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 1.5e-100 370.2 301 63.5
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.4e-100 369.0 315 74.3
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 4.4e-100 368.6 316 73.1
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 5.8e-100 368.2 308 73.7
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 9.9e-100 367.5 299 62.5
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.3e-99 367.1 282 75.2
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.1e-98 364.0 310 72.3
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 1.4e-98 363.6 311 65.0
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 1.2e-97 360.5 302 64.6
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 2.1e-97 359.8 311 64.0
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 2.7e-97 359.4 309 70.2
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 3.5e-97 359.0 311 64.3
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 4.6e-97 358.6 311 63.7
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 6.0e-97 358.2 321 72.9
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 1.0e-96 357.5 311 64.0
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 5.1e-96 355.1 310 69.4
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.1e-95 354.0 311 63.0
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 1.9e-95 353.2 315 59.0
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.9e-95 353.2 313 71.9
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.5e-95 352.8 310 67.1
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 4.3e-95 352.1 309 61.2
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 4.3e-95 352.1 296 60.8
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 5.6e-95 351.7 311 61.1
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 7.3e-95 351.3 309 65.4
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 9.6e-95 350.9 309 61.2
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 9.6e-95 350.9 309 60.5
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 4.8e-94 348.6 297 75.1
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 6.9e-93 344.7 280 77.9
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 2.0e-92 343.2 341 56.3
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 3.4e-92 342.4 318 67.6
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 5.8e-92 341.7 233 93.6
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 1.7e-91 340.1 340 67.1
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 8.4e-91 337.8 299 73.2
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 4.2e-90 335.5 319 64.6
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 5.4e-90 335.1 306 61.1
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 9.3e-90 334.3 308 58.1
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 6.0e-89 331.6 299 72.9
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.0e-88 330.9 261 67.8
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 3.0e-88 329.3 311 65.9
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 4.3e-87 325.5 299 55.5
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 1.6e-86 323.6 308 60.7
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.1e-86 323.2 309 56.0
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.1e-86 323.2 322 66.5
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 6.9e-85 318.2 264 74.2
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 1.2e-84 317.4 356 56.2
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 1.2e-84 317.4 356 56.2
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.0e-84 316.6 320 65.6
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 7.6e-84 314.7 257 78.6
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 9.9e-84 314.3 281 71.5
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.9e-83 312.8 257 78.2
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 7.1e-82 308.1 274 70.8
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.6e-81 307.0 310 65.2
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 3.5e-81 305.8 326 61.3
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.1e-79 300.8 259 62.9
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 5.6e-79 298.5 337 51.3
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 4.8e-78 295.4 308 53.9
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.4e-77 293.9 350 56.6
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.4e-77 293.9 350 56.6
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 2.4e-77 293.1 214 80.4
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 4.0e-77 292.4 264 72.0
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 6.9e-77 291.6 309 53.7
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 2.6e-76 289.7 243 77.8
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 1.4e-74 283.9 214 79.4
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 6.3e-70 268.5 273 56.4
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 6.3e-70 268.5 231 78.4
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 1.1e-69 267.7 249 61.4
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 8.5e-67 258.1 234 61.1
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 9.4e-66 254.6 235 75.7
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 2.7e-65 253.1 189 86.8
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 6.1e-65 251.9 235 75.3
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.5e-63 247.3 233 59.2
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 4.8e-62 242.3 239 74.5
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 1.4e-61 240.7 299 48.2
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 5.9e-60 235.3 219 72.1
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 3.8e-59 232.6 296 49.3
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.9e-58 230.3 237 55.7
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.6e-57 227.3 233 70.4
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.1e-57 226.9 245 64.1
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.0e-56 223.0 234 70.9
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 1.4e-53 214.2 128 78.9
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 1.0e-51 208.0 224 53.1
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 1.0e-51 208.0 224 53.1
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 6.1e-49 198.7 242 49.6
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.0e-47 193.7 274 43.8
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 5.7e-47 192.2 295 42.4
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.2e-46 190.3 248 64.1
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 4.7e-41 172.6 261 54.8
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 1.0e-40 171.4 325 46.2
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 3.4e-39 166.4 234 54.7
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 8.3e-38 161.8 146 71.9
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 4.1e-37 159.5 154 76.6
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 1.0e-35 154.8 176 50.6
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 1.3e-35 154.5 117 61.5
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.8e-32 141.7 74 83.8
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 2.6e-31 140.2 245 39.6
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 5.0e-27 125.9 73 75.3
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 6.6e-27 125.6 73 69.9
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-26 124.4 162 48.8
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.8e-25 120.2 140 68.6
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.8e-24 117.5 119 53.8
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 5.4e-21 105.9 92 64.1
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 4.5e-20 102.8 59 69.5
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 6.6e-19 99.0 71 71.8
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 9.5e-18 95.1 128 33.6
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.6e-15 87.0 93 50.5
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 2.6e-15 87.0 50 68.0
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 2.0e-12 77.4 128 39.1
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 6.0e-12 75.9 91 47.3
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 9.5e-10 68.6 46 76.1
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 3.6e-09 66.6 44 77.3
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 8.0e-09 65.5 114 37.7


User provided reference genes

Program Settings