Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g004900 Solanum pennellii HOM05D007796 ORTHO05D009853 1.4e-31 139.0 70 100.0
Nitab4.5_0000242g0120 Nicotiana tabacum HOM05D007796 ORTHO05D009853 1.0e-18 96.3 70 71.4
CSS0002213 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 2.0e-14 82.0 69 55.1
CSS0009025 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 2.0e-14 82.0 69 55.1
Migut.G01293 Erythranthe guttata HOM05D007796 ORTHO05D009853 3.3e-14 81.3 68 55.9
Nitab4.5_0012444g0010 Nicotiana tabacum HOM05D007796 ORTHO05D009853 3.3e-14 81.3 66 63.6
Peaxi162Scf00075g01546 Petunia axillaris HOM05D007796 ORTHO05D009853 5.7e-14 80.5 70 61.4
Nitab4.5_0001521g0060 Nicotiana tabacum HOM05D007796 ORTHO05D009853 7.4e-14 80.1 66 63.6
Actinidia27090 Actinidia chinensis HOM05D007796 ORTHO05D009853 9.7e-14 79.7 69 58.0
vmacro00674 Vaccinium macrocarpon HOM05D007796 ORTHO05D009853 1.3e-13 79.3 57 63.2
Rhsim09G0018700 Rhododendron simsii HOM05D007796 ORTHO05D009853 1.7e-13 79.0 57 64.9
Rhsim09G0019400 Rhododendron simsii HOM05D007796 ORTHO05D009853 6.3e-13 77.0 57 63.2
Rhsim09G0019700 Rhododendron simsii HOM05D007796 ORTHO05D009853 6.3e-13 77.0 57 63.2
MSTRG.9748 Avicennia marina HOM05D007796 ORTHO05D009853 1.1e-12 76.3 65 55.4
SalBow2G2954 Salvia bowleyana HOM05D007796 ORTHO05D009853 1.8e-12 75.5 65 55.4
Gohir.D07G093800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 3.1e-12 74.7 68 51.5
Gorai.001G100500 Gossypium raimondii HOM05D007796 ORTHO05D009853 3.1e-12 74.7 68 51.5
Hma1.2p1_0487F.1_g163590 Hydrangea macrophylla HOM05D007796 ORTHO05D009853 3.1e-12 74.7 70 55.7
Gohir.A07G088800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 4.1e-12 74.3 68 51.5
COL.COLO4_04515 Corchorus olitorius HOM05D007796 ORTHO05D009853 2.0e-11 72.0 68 50.0
GSVIVG01004106001 Vitis vinifera HOM05D007796 ORTHO05D009853 2.0e-11 72.0 69 53.6
DCAR_005469 Daucus carota HOM05D007796 ORTHO05D009853 3.5e-11 71.2 66 51.5
A05p40630 Brassica napus HOM05D007796 ORTHO05D009853 5.9e-11 70.5 65 47.7
BraA05t22794Z Brassica rapa HOM05D007796 ORTHO05D009853 5.9e-11 70.5 65 47.7
Oeu022686.1 Olea europaea HOM05D007796 ORTHO05D009853 7.7e-11 70.1 55 60.0
Thecc.01G204800 Theobroma cacao HOM05D007796 ORTHO05D009853 7.7e-11 70.1 68 48.5
BcaC05g29552 Brassica carinata HOM05D000328 ORTHO05D000191 1.0e-10 69.7 65 46.2
BolC5t34628H Brassica oleracea HOM05D007796 ORTHO05D009853 1.0e-10 69.7 65 46.2
C05p59740 Brassica napus HOM05D007796 ORTHO05D009853 1.3e-10 69.3 65 46.2
TPR.G5064 Trifolium pratense HOM05D007796 ORTHO05D009853 3.8e-10 67.8 71 46.5
Psat4g158920 Pisum sativum HOM05D007796 ORTHO05D009853 5.0e-10 67.4 71 46.5
Sp3g06500 Schrenkiella parvula HOM05D007796 ORTHO05D009853 5.0e-10 67.4 65 46.2
Manes.12G058902 Manihot esculenta HOM05D007796 ORTHO05D009853 8.5e-10 66.6 68 47.1
Nn7g37568 Nelumbo nucifera HOM05D007796 ORTHO05D009853 1.9e-09 65.5 55 58.2
unitig_0.g2392 Utricularia gibba HOM05D007796 ORTHO05D009853 2.5e-09 65.1 57 52.6
AL3G18920 Arabidopsis lyrata HOM05D007796 ORTHO05D009853 3.2e-09 64.7 67 44.8
Carub.0003s0713 Capsella rubella HOM05D007796 ORTHO05D009853 3.2e-09 64.7 67 43.3
Lsat_1_v5_gn_2_38801 Lactuca sativa HOM05D007796 ORTHO05D009853 4.2e-09 64.3 55 58.2
PGR083G0658 Punica granatum HOM05D007796 ORTHO05D009853 4.2e-09 64.3 68 47.1
THA.LOC104822455 Tarenaya hassleriana HOM05D007796 ORTHO05D009853 4.2e-09 64.3 63 47.6
AT3G07568 Arabidopsis thaliana HOM05D007796 ORTHO05D009853 5.5e-09 63.9 67 43.3
Medtr8g028085 Medicago truncatula HOM05D007796 ORTHO05D009853 5.5e-09 63.9 55 49.1
MELO3C012717.2 Cucumis melo HOM05D007796 ORTHO05D009853 9.4e-09 63.2 55 52.7
Eucgr.H00678 Eucalyptus grandis HOM05D007796 ORTHO05D009853 9.4e-09 63.2 55 49.1
Ciclev10018341m.g Citrus clementina HOM05D007796 ORTHO05D009853 1.2e-08 62.8 55 50.9
Atru.chr6.3486 Acer truncatum HOM05D007796 ORTHO05D009853 2.1e-08 62.0 55 49.1
Thhalv10021850m.g Eutrema salsugineum HOM05D007796 ORTHO05D009853 2.1e-08 62.0 67 43.3
arahy.Tifrunner.gnm1.ann1.M2QILT Arachis hypogaea HOM05D007796 ORTHO05D009853 2.7e-08 61.6 56 51.8
Ca_23572_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 2.7e-08 61.6 58 46.6
Ca_23581_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 2.7e-08 61.6 58 46.6
Cc03_g12300 Coffea canephora HOM05D007796 ORTHO05D009853 6.1e-08 60.5 68 44.1
TWI36G1414 Tripterygium wilfordii HOM05D007796 ORTHO05D009853 6.1e-08 60.5 55 50.9
CARHR082260 Cardamine hirsuta HOM05D007796 ORTHO05D009853 8.0e-08 60.1 56 48.2
Lj3g0021991 Lotus japonicus HOM05D007796 ORTHO05D009853 8.0e-08 60.1 69 44.9
Aa31LG5G18120 Aethionema arabicum HOM05D007796 ORTHO05D009853 1.0e-07 59.7 65 41.5
CANSAT35G1173 Cannabis sativa HOM05D007796 ORTHO05D009853 2.3e-07 58.5 63 44.4
Manes.13G057800 Manihot esculenta HOM05D007796 ORTHO05D009853 2.3e-07 58.5 68 44.1
Phvul.010G110100 Phaseolus vulgaris HOM05D007796 ORTHO05D009853 3.0e-07 58.2 57 49.1
MD16G1238500 Malus domestica HOM05D007796 ORTHO05D009853 5.2e-07 57.4 62 43.5
CsaV3_7G027090 Cucumis sativus L. HOM05D007796 ORTHO05D009853 6.7e-07 57.0 59 47.5
Potri.014G197400 Populus trichocarpa HOM05D007796 ORTHO05D009853 6.7e-07 57.0 55 50.9
Phvul.010G110050 Phaseolus vulgaris HOM05D007796 ORTHO05D009853 8.8e-07 56.6 56 48.2
RcHm_v2.0_Chr4g0397691 Rosa chinensis HOM05D007796 ORTHO05D009853 1.2e-06 56.2 62 46.8
Sed0024779 Sechium edule HOM05D007796 ORTHO05D009853 1.2e-06 56.2 59 49.2
Lalb_Chr17g0342271 Lupinus albus HOM05D007796 ORTHO05D009853 1.5e-06 55.8 66 42.4
MD13G1233500 Malus domestica HOM05D007796 ORTHO05D009853 1.5e-06 55.8 62 41.9
Glyma.07G059400 Glycine max HOM05D007796 ORTHO05D009853 2.6e-06 55.1 61 39.3
FvH4_4g06110 Fragaria vesca HOM05D007796 ORTHO05D009853 3.3e-06 54.7 67 41.8
FAN12G2913 Fragaria x ananassa HOM05D007796 ORTHO05D009853 3.3e-06 54.7 67 41.8
FAN17G0402 Fragaria x ananassa HOM05D007796 ORTHO05D009853 3.3e-06 54.7 67 41.8
EL10Ac3g06021 Beta vulgaris HOM05D007796 ORTHO05D009853 5.7e-06 53.9 59 45.8
FAN07G1080 Fragaria x ananassa HOM05D007796 ORTHO05D009853 5.7e-06 53.9 54 48.1
CiPaw.13G057300 Carya illinoinensis HOM05D007796 ORTHO05D009853 9.7e-06 53.1 68 42.6
FAN22G0383 Fragaria x ananassa HOM05D007796 ORTHO05D009853 9.7e-06 53.1 67 40.3


User provided reference genes

Program Settings