Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 3.2e-72 275.0 142 100.0
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.6e-71 272.7 140 100.0
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.5e-69 265.4 142 97.2
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.1e-67 260.0 142 95.8
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 3.4e-66 255.0 139 91.4
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.5e-66 254.6 142 95.1
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.3e-65 253.1 139 90.6
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.3e-65 253.1 143 94.4
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.8e-65 251.5 139 89.2
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 3.8e-65 251.5 139 89.9
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 4.9e-65 251.1 139 90.6
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 4.9e-65 251.1 139 89.2
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 4.9e-65 251.1 139 89.9
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 6.5e-65 250.8 139 89.2
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 8.4e-65 250.4 139 89.2
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.4e-64 249.6 139 89.2
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.9e-64 249.2 139 88.5
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.9e-64 249.2 139 88.5
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 1.9e-64 249.2 139 89.2
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 2.5e-64 248.8 139 89.2
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 4.2e-64 248.1 139 89.2
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 4.2e-64 248.1 144 91.0
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 7.1e-64 247.3 139 87.8
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 7.1e-64 247.3 139 88.5
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 9.3e-64 246.9 139 88.5
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 1.2e-63 246.5 138 89.9
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 2.7e-63 245.4 139 87.1
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 3.5e-63 245.0 139 87.8
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 3.5e-63 245.0 137 89.1
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 4.6e-63 244.6 139 90.6
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 4.6e-63 244.6 139 87.8
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 4.6e-63 244.6 140 87.9
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.3e-62 243.0 140 89.3
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 1.3e-62 243.0 139 87.1
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.0e-62 241.9 139 87.8
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 3.0e-62 241.9 139 88.5
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.0e-62 241.9 139 85.6
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 3.9e-62 241.5 139 86.3
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 5.1e-62 241.1 139 86.3
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 8.7e-62 240.4 139 86.3
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 8.7e-62 240.4 139 85.6
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.1e-61 240.0 140 87.9
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 1.1e-61 240.0 139 88.5
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.5e-61 239.6 142 89.4
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 2.5e-61 238.8 139 86.3
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 2.5e-61 238.8 139 86.3
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 2.5e-61 238.8 139 84.2
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 2.5e-61 238.8 139 86.3
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.3e-61 238.4 139 84.2
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 3.3e-61 238.4 140 87.9
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 4.3e-61 238.0 141 87.9
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 4.3e-61 238.0 139 84.2
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 5.7e-61 237.7 139 84.2
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 5.7e-61 237.7 139 83.5
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 7.4e-61 237.3 139 85.6
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 7.4e-61 237.3 139 86.3
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 9.7e-61 236.9 139 87.1
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.6e-60 236.1 139 83.5
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.6e-60 236.1 139 83.5
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 1.6e-60 236.1 139 83.5
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 1.6e-60 236.1 139 85.6
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.1e-60 235.7 139 87.1
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.1e-60 235.7 139 83.5
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 2.8e-60 235.3 139 84.2
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 2.8e-60 235.3 139 83.5
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 3.7e-60 235.0 141 87.9
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 3.7e-60 235.0 139 84.2
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.7e-60 235.0 139 84.2
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 6.3e-60 234.2 139 82.7
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 8.2e-60 233.8 138 84.1
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 8.2e-60 233.8 139 84.2
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 1.8e-59 232.6 139 82.7
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.8e-59 232.6 139 82.7
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 2.4e-59 232.3 139 81.3
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 3.1e-59 231.9 140 83.6
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.1e-59 231.9 141 82.3
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.1e-59 231.9 139 82.7
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 5.3e-59 231.1 139 80.6
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 5.3e-59 231.1 140 83.6
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 5.3e-59 231.1 139 83.5
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 5.3e-59 231.1 139 84.2
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 6.9e-59 230.7 138 84.8
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 1.5e-58 229.6 140 81.4
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 2.6e-58 228.8 139 79.9
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 2.6e-58 228.8 139 84.9
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 5.9e-58 227.6 153 77.1
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 5.9e-58 227.6 141 81.6
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.0e-57 226.9 139 82.0
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.7e-57 226.1 137 81.0
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.2e-57 225.7 139 82.0
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 2.2e-57 225.7 144 77.8
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 3.8e-57 224.9 143 81.8
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 3.8e-57 224.9 139 82.0
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 5.0e-57 224.6 158 73.4
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 5.0e-57 224.6 158 73.4
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 5.0e-57 224.6 140 82.1
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 8.5e-57 223.8 139 81.3
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 2.5e-56 222.2 142 81.0
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 2.5e-56 222.2 141 84.4
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 3.2e-56 221.9 142 78.2
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.1e-55 219.2 139 77.7
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 2.7e-55 218.8 138 81.9
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 1.0e-54 216.9 138 79.7
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 1.3e-54 216.5 192 64.6
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 2.3e-54 215.7 141 81.6
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 3.9e-54 214.9 142 80.3
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 5.1e-54 214.5 138 79.7
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 5.1e-54 214.5 138 79.7
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.1e-53 213.4 142 77.5
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.1e-53 213.4 140 78.6
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.5e-53 213.0 142 77.5
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 2.5e-53 212.2 149 75.2
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 9.7e-53 210.3 142 76.8
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.3e-52 209.9 140 79.3
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 2.2e-52 209.1 140 76.4
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.1e-48 196.8 139 70.5
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.6e-47 191.8 128 75.0
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 4.6e-47 191.4 140 67.1
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 3.9e-46 188.3 136 67.6
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 6.7e-46 187.6 158 62.7
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.1e-45 186.8 121 81.8
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.1e-45 186.8 136 67.6
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 4.4e-45 184.9 130 74.6
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 1.3e-44 183.3 143 71.3
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 1.4e-43 179.9 138 71.7
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 1.4e-43 179.9 141 70.9
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.8e-43 179.5 100 93.0
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 2.6e-42 175.6 129 71.3
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 3.4e-42 175.3 140 68.6
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 2.2e-41 172.6 121 77.7
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.9e-41 172.2 100 91.0
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 4.2e-40 168.3 118 77.1
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.6e-39 166.4 138 60.9
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 4.7e-39 164.9 136 64.0
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 1.4e-38 163.3 127 70.1
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.8e-38 162.9 139 61.9
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 1.5e-37 159.8 141 60.3
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 3.7e-36 155.2 139 56.8
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.1e-35 152.1 131 61.1
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 7.0e-35 151.0 80 97.5
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 1.0e-30 137.1 136 55.1
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.3e-28 127.9 78 82.1
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.4e-27 126.7 139 48.9
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 2.5e-24 115.9 95 67.4
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.7e-23 111.7 58 96.6
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.8e-22 109.8 58 94.8
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 3.5e-18 95.5 66 72.7
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 3.1e-11 72.4 51 72.5


User provided reference genes

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