Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 4.3e-54 214.5 120 100.0
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 6.3e-53 210.7 119 98.3
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 6.9e-52 207.2 120 96.7
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 3.9e-47 191.4 119 88.2
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 2.0e-46 189.1 119 88.2
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 2.6e-43 178.7 119 83.2
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 6.5e-42 174.1 119 79.8
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.1e-41 173.3 119 80.7
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.4e-41 172.9 146 70.5
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 9.4e-41 170.2 120 78.3
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 9.4e-41 170.2 120 78.3
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.7e-40 168.7 146 69.2
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 6.1e-40 167.5 117 79.5
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 7.9e-40 167.2 119 74.8
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 2.3e-39 165.6 119 76.5
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 4.8e-37 157.9 122 73.8
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 1.8e-36 156.0 120 75.8
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.4e-36 155.6 119 73.1
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.4e-36 155.6 119 73.1
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.2e-35 153.3 120 72.5
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 4.5e-35 151.4 120 72.5
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.0e-34 150.2 120 70.0
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 3.8e-34 148.3 117 70.1
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.4e-33 146.4 118 69.5
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.9e-33 146.0 119 68.1
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.5e-33 144.4 120 67.5
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 9.4e-33 143.7 119 68.1
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 9.4e-33 143.7 122 70.5
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.2e-32 143.3 119 68.1
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.6e-32 142.9 120 69.2
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 2.1e-32 142.5 119 67.2
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 3.6e-32 141.7 119 66.4
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 6.1e-32 141.0 103 75.7
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 8.0e-32 140.6 113 68.1
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.0e-32 140.6 120 65.8
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.0e-31 140.2 120 67.5
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.8e-31 139.4 123 69.1
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.8e-31 139.4 115 69.6
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 2.3e-31 139.0 120 69.2
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 2.3e-31 139.0 113 67.3
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 3.0e-31 138.7 120 66.7
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 5.2e-31 137.9 120 67.5
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 8.8e-31 137.1 119 65.5
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.5e-30 136.3 120 63.3
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.5e-30 136.3 120 63.3
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 2.0e-30 136.0 120 68.3
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 3.3e-30 135.2 120 64.2
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 3.3e-30 135.2 119 64.7
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 5.7e-30 134.4 109 67.9
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 7.4e-30 134.0 120 65.0
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 9.7e-30 133.7 119 65.5
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 9.7e-30 133.7 120 65.8
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.2e-29 132.5 120 65.0
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 2.8e-29 132.1 121 61.2
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 2.8e-29 132.1 119 63.0
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.8e-29 131.3 113 64.6
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.8e-29 131.3 113 64.6
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 6.3e-29 131.0 114 65.8
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.2e-29 130.6 120 64.2
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 8.2e-29 130.6 109 65.1
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 8.2e-29 130.6 119 64.7
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 1.1e-28 130.2 115 67.0
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.1e-28 130.2 119 61.3
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 1.8e-28 129.4 119 60.5
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 2.4e-28 129.0 119 62.2
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 2.4e-28 129.0 120 62.5
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 5.3e-28 127.9 121 62.0
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 9.1e-28 127.1 119 63.9
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.6e-27 126.3 122 63.9
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.6e-27 126.3 122 63.9
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.6e-27 126.3 116 62.1
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 4.5e-27 124.8 119 60.5
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 4.5e-27 124.8 119 60.5
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 7.7e-27 124.0 114 63.2
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.7e-26 122.9 120 60.8
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 3.8e-26 121.7 119 59.7
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 8.5e-26 120.6 119 60.5
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 1.5e-25 119.8 121 62.8
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 1.5e-25 119.8 97 66.0
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 1.9e-25 119.4 118 57.6
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 3.2e-25 118.6 120 60.0
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 5.5e-25 117.9 119 54.6
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 5.5e-25 117.9 120 58.3
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.2e-24 116.7 118 57.6
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.6e-24 116.3 125 59.2
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.1e-24 115.9 118 56.8
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.1e-24 115.9 119 57.1
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.1e-24 115.9 114 61.4
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.6e-24 115.2 116 56.9
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 3.6e-24 115.2 112 59.8
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 8.0e-24 114.0 119 56.3
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 1.0e-23 113.6 120 57.5
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.0e-23 113.6 120 57.5
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.4e-23 113.2 120 58.3
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.8e-23 112.8 121 55.4
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 2.3e-23 112.5 122 57.4
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 6.7e-23 110.9 97 62.9
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.5e-22 109.8 121 55.4
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.5e-22 109.8 117 56.4
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.0e-22 109.4 119 54.6
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 3.3e-22 108.6 119 54.6
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 4.4e-22 108.2 136 54.4
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 5.7e-22 107.8 118 60.2
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 7.5e-22 107.5 119 55.5
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 9.7e-22 107.1 98 58.2
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.2e-21 105.9 119 55.5
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 2.8e-21 105.5 124 54.0
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 8.3e-21 104.0 124 50.8
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.8e-20 102.8 116 56.9
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.2e-19 100.1 116 52.6
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 5.9e-19 97.8 102 55.9
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 5.9e-19 97.8 125 53.6
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.0e-18 97.1 124 53.2
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 3.8e-18 95.1 111 50.5
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 7.2e-17 90.9 142 47.2
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.6e-16 89.7 101 54.5
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 6.1e-16 87.8 69 63.8
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 2.0e-14 82.8 116 47.4
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.6e-14 82.4 120 46.7
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.6e-14 82.4 108 47.2
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.6e-14 82.4 108 47.2
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.6e-14 82.4 108 47.2
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.3e-13 80.1 120 43.3
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.3e-13 80.1 119 42.0
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.7e-13 79.7 117 46.2
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.2e-13 79.3 120 43.3
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.2e-13 79.3 121 45.5
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 2.2e-13 79.3 122 44.3
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 2.8e-13 79.0 120 41.7
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 3.7e-13 78.6 107 47.7
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 4.8e-13 78.2 73 67.1
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 6.3e-13 77.8 115 46.1
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 1.1e-12 77.0 120 42.5
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 2.4e-12 75.9 118 40.7
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 3.1e-12 75.5 100 55.0
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.2e-11 73.6 120 45.0
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 1.6e-11 73.2 125 37.6
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 2.9e-10 68.9 66 54.5
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 1.5e-09 66.6 62 56.5
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 7.2e-09 64.3 42 73.8
AagrBONN_evm.TU.Sc2ySwM_344.5012 Anthoceros agrestis HOM05D028980 ORTHO05D026613 9.8e-06 53.9 93 45.2


User provided reference genes

Program Settings