Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 4.1e-54 214.5 114 100.0
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 1.3e-47 193.0 114 92.1
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 3.3e-19 98.6 117 57.3
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 8.1e-18 94.0 112 56.2
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 8.1e-18 94.0 112 56.2
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 1.8e-17 92.8 112 55.4
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 1.7e-15 86.3 113 52.2
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 3.2e-14 82.0 116 48.3
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 1.2e-13 80.1 115 43.5
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 1.2e-13 80.1 115 44.3
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 1.2e-13 80.1 111 44.1
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.7e-13 79.0 113 47.8
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 3.5e-13 78.6 114 45.6
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 4.6e-13 78.2 113 43.4
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 4.6e-13 78.2 114 43.0
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 1.0e-12 77.0 113 47.8
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 1.3e-12 76.6 111 48.6
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 1.8e-12 76.3 114 43.9
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 2.3e-12 75.9 114 43.9
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 2.3e-12 75.9 106 50.9
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 3.0e-12 75.5 113 45.1
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 3.0e-12 75.5 90 54.4
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 5.1e-12 74.7 113 46.0
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 8.7e-12 73.9 109 48.6
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 1.1e-11 73.6 111 48.6
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 1.1e-11 73.6 115 46.1
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 1.5e-11 73.2 102 51.0
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 1.9e-11 72.8 112 44.6
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 2.5e-11 72.4 110 46.4
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 2.5e-11 72.4 114 45.6
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 4.3e-11 71.6 106 46.2
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 4.3e-11 71.6 114 43.9
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 5.6e-11 71.2 114 44.7
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 7.4e-11 70.9 116 47.4
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 7.4e-11 70.9 111 47.7
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 9.6e-11 70.5 109 48.6
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 2.8e-10 68.9 106 45.3
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.8e-10 68.9 109 47.7
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 3.6e-10 68.6 107 46.7
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 4.8e-10 68.2 119 42.9
Nitab4.5_0001231g0140 Nicotiana tabacum HOM05D007590 ORTHO05D007875 4.8e-10 68.2 102 48.0
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 6.2e-10 67.8 109 42.2
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 8.1e-10 67.4 111 43.2
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 8.1e-10 67.4 122 40.2
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 8.1e-10 67.4 111 47.7
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.1e-09 67.0 111 47.7
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 2.4e-09 65.9 116 44.8
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 5.3e-09 64.7 113 40.7
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 5.3e-09 64.7 109 44.0
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 6.9e-09 64.3 109 43.1
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 9.0e-09 63.9 110 46.4
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 9.0e-09 63.9 110 46.4
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 1.2e-08 63.5 115 39.1
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 1.2e-08 63.5 72 55.6
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 1.2e-08 63.5 114 37.7
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.5e-08 63.2 110 43.6
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 1.5e-08 63.2 110 42.7
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.5e-08 63.2 111 45.0
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 1.5e-08 63.2 69 53.6
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 2.0e-08 62.8 105 43.8
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 2.6e-08 62.4 117 44.4
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 2.6e-08 62.4 116 41.4
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 3.4e-08 62.0 108 42.6
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 3.4e-08 62.0 109 41.3
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 4.5e-08 61.6 111 44.1
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 4.5e-08 61.6 120 38.3
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 4.5e-08 61.6 111 45.9
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 5.8e-08 61.2 85 51.8
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 5.8e-08 61.2 110 44.5
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 7.6e-08 60.8 117 42.7
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 2.9e-07 58.9 134 36.6
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 3.8e-07 58.5 116 39.7
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 3.8e-07 58.5 112 41.1
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 4.9e-07 58.2 112 33.0
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 4.9e-07 58.2 123 40.7
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 4.9e-07 58.2 109 42.2
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.4e-06 56.6 105 38.1
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.4e-06 56.6 105 38.1
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 1.9e-06 56.2 105 41.9
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 3.2e-06 55.5 109 39.4
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 3.2e-06 55.5 109 39.4
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 5.5e-06 54.7 117 33.3
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 7.1e-06 54.3 104 42.3
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 9.3e-06 53.9 113 35.4


User provided reference genes

Program Settings