Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 6.2e-97 357.5 179 100.0
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 4.0e-96 354.8 179 98.9
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 6.8e-96 354.0 179 98.9
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 3.3e-90 335.1 179 92.7
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 3.6e-81 305.1 189 87.3
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 2.1e-76 289.3 189 83.6
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 3.3e-74 282.0 178 80.3
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 3.7e-65 251.9 189 68.8
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 2.6e-63 245.7 187 67.4
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 2.2e-62 242.7 187 68.4
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 3.5e-60 235.3 183 67.2
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.3e-59 233.4 193 67.4
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 1.8e-59 233.0 188 67.6
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 3.3e-58 228.8 159 74.8
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 2.1e-57 226.1 174 69.5
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 3.7e-57 225.3 192 61.5
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 4.8e-57 224.9 186 66.7
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.4e-56 223.4 185 66.5
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 1.8e-56 223.0 146 78.8
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 4.0e-56 221.9 157 76.4
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 9.0e-56 220.7 186 66.1
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 1.2e-55 220.3 199 62.3
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 1.5e-55 219.9 134 82.1
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 1.5e-55 219.9 134 82.1
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.5e-55 219.9 158 70.3
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 2.0e-55 219.5 189 64.6
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 2.0e-55 219.5 154 72.7
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 2.0e-55 219.5 157 72.6
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 2.6e-55 219.2 187 65.2
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 4.5e-55 218.4 188 62.2
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 4.5e-55 218.4 123 87.8
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 7.6e-55 217.6 173 67.6
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 7.6e-55 217.6 182 66.5
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 1.7e-54 216.5 158 74.7
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.2e-54 216.1 188 62.8
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 2.2e-54 216.1 188 63.3
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 2.2e-54 216.1 192 59.9
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 2.9e-54 215.7 134 83.6
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 3.8e-54 215.3 133 81.2
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 5.0e-54 214.9 188 63.3
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 6.5e-54 214.5 191 60.2
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 8.4e-54 214.2 164 71.3
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 8.4e-54 214.2 138 79.0
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 1.1e-53 213.8 171 67.8
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 1.4e-53 213.4 146 72.6
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 1.9e-53 213.0 177 66.7
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 5.5e-53 211.5 132 79.5
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 7.1e-53 211.1 165 70.3
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 7.1e-53 211.1 124 83.9
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 1.2e-52 210.3 164 68.3
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 1.2e-52 210.3 152 71.7
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.6e-52 209.9 190 62.1
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 2.1e-52 209.5 168 67.3
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 4.6e-52 208.4 171 64.3
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 6.1e-52 208.0 140 76.4
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 7.9e-52 207.6 140 75.7
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 7.9e-52 207.6 195 59.5
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 3.0e-51 205.7 146 70.5
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 3.0e-51 205.7 153 73.9
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 5.1e-51 204.9 135 74.8
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 8.7e-51 204.1 137 75.2
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 1.5e-50 203.4 187 60.4
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 1.5e-50 203.4 168 65.5
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 3.3e-50 202.2 144 73.6
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 4.3e-50 201.8 155 70.3
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 7.4e-50 201.1 209 54.5
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 7.4e-50 201.1 171 64.9
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 9.7e-50 200.7 156 68.6
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 1.3e-49 200.3 141 72.3
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.3e-49 200.3 155 70.3
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 1.3e-49 200.3 121 81.8
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 2.2e-49 199.5 169 63.9
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 6.3e-49 198.0 164 63.4
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 6.3e-49 198.0 155 69.7
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.4e-48 196.1 155 69.0
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 5.3e-48 194.9 169 65.1
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 9.0e-48 194.1 128 80.5
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 9.0e-48 194.1 154 66.9
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 9.0e-48 194.1 154 66.9
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 1.2e-47 193.7 148 68.2
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.2e-47 193.7 155 68.4
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 1.2e-47 193.7 145 68.3
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.2e-47 193.7 167 62.3
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 1.2e-47 193.7 134 78.4
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 1.5e-47 193.4 173 63.6
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 1.5e-47 193.4 143 69.2
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 1.5e-47 193.4 134 78.4
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 2.0e-47 193.0 149 71.1
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 2.6e-47 192.6 121 79.3
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 5.9e-47 191.4 139 72.7
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 5.9e-47 191.4 133 76.7
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 2.2e-46 189.5 168 63.1
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 5.0e-46 188.3 168 63.1
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 1.9e-45 186.4 123 74.8
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 2.5e-45 186.0 168 62.5
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 5.5e-45 184.9 135 71.9
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 2.7e-44 182.6 119 77.3
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 3.0e-43 179.1 185 57.3
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 3.0e-43 179.1 122 77.0
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 5.1e-43 178.3 186 58.1
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 2.0e-42 176.4 112 78.6
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 2.0e-42 176.4 112 78.6
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 1.2e-39 167.2 170 58.8
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 5.0e-38 161.8 106 73.6
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 3.6e-36 155.6 202 49.5
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 2.0e-34 149.8 116 71.6
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 1.1e-32 144.1 86 84.9
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 1.5e-29 133.7 107 67.3
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 2.7e-28 129.4 76 82.9
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 2.7e-28 129.4 93 71.0
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 3.6e-28 129.0 91 71.4
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 8.0e-28 127.9 95 71.6
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 8.0e-28 127.9 79 81.0
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 2.3e-27 126.3 75 82.7
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 2.6e-26 122.9 102 66.7
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.3e-25 120.6 112 60.7
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 1.7e-25 120.2 85 72.9
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.1e-24 117.5 102 59.8
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 1.1e-24 117.5 180 44.4
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 1.9e-21 106.7 67 77.6
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 9.4e-21 104.4 76 65.8
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 1.8e-19 100.1 104 53.8
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 4.4e-18 95.5 64 75.0
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 1.7e-17 93.6 61 73.8
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 3.7e-17 92.4 95 55.8
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 1.4e-16 90.5 102 54.9
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 3.1e-16 89.4 108 45.4
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 1.1e-13 80.9 92 47.8
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 1.2e-10 70.9 59 62.7
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 1.2e-07 60.8 87 43.7
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 1.0e-06 57.8 85 43.5


User provided reference genes

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