Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 2.4e-131 472.2 251 100.0
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 2.7e-130 468.8 251 98.8
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 9.9e-101 370.5 252 79.4
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 9.6e-96 354.0 251 77.7
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 2.8e-87 325.9 177 97.7
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.6e-82 310.1 240 72.9
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 3.3e-48 196.1 172 68.6
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 7.0e-30 135.2 205 42.9
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 5.9e-29 132.1 191 44.5
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.0e-28 131.3 227 41.9
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.8e-28 129.4 189 44.4
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 3.8e-28 129.4 229 40.6
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 6.5e-28 128.6 259 38.6
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 6.5e-28 128.6 264 38.6
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 6.5e-28 128.6 229 39.3
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 8.5e-28 128.3 251 37.5
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.1e-27 127.9 191 42.9
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.1e-27 127.9 229 39.3
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.9e-27 127.1 189 43.9
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 9.4e-27 124.8 244 40.2
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 9.4e-27 124.8 252 40.1
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 1.2e-26 124.4 215 42.8
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 2.1e-26 123.6 202 40.6
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 2.1e-26 123.6 189 42.3
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 3.6e-26 122.9 209 42.1
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 4.7e-26 122.5 228 40.4
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 6.1e-26 122.1 253 36.0
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.3e-25 120.2 215 40.9
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 6.8e-25 118.6 207 41.1
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.5e-24 117.5 210 42.4
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 2.6e-24 116.7 258 38.4
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 3.4e-24 116.3 256 37.1
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 2.2e-23 113.6 261 36.4
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 2.8e-23 113.2 210 40.0
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 3.7e-23 112.8 210 38.1
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 3.7e-23 112.8 191 40.3
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 6.3e-23 112.1 239 37.2
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 6.3e-23 112.1 193 39.9
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 8.3e-23 111.7 254 37.0
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.1e-22 111.3 262 35.5
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.1e-22 111.3 249 36.1
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 1.1e-22 111.3 191 39.3
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.4e-22 110.9 208 39.9
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 1.8e-22 110.5 249 36.1
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.4e-22 110.2 194 41.2
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 3.1e-22 109.8 255 34.5
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 4.1e-22 109.4 236 35.6
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 4.1e-22 109.4 207 39.1
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 7.0e-22 108.6 236 35.6
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 7.0e-22 108.6 239 36.4
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 7.0e-22 108.6 255 36.1
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 9.2e-22 108.2 236 35.6
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 9.2e-22 108.2 214 36.0
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.2e-21 107.8 255 34.9
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.2e-21 107.8 255 34.9
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 2.7e-21 106.7 254 35.8
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 2.7e-21 106.7 192 37.5
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 3.5e-21 106.3 236 35.2
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 3.5e-21 106.3 236 35.2
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 3.5e-21 106.3 211 36.5
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 3.5e-21 106.3 258 32.6
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 3.5e-21 106.3 186 39.8
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 4.5e-21 105.9 180 41.7
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 5.9e-21 105.5 210 38.1
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 5.9e-21 105.5 204 40.2
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 7.7e-21 105.1 186 38.7
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 7.7e-21 105.1 191 39.8
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.0e-20 104.8 239 36.4
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.0e-20 104.8 215 37.7
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.0e-20 104.8 241 34.9
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.3e-20 104.4 258 34.1
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.3e-20 104.4 258 34.1
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.3e-20 104.4 225 37.8
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 1.7e-20 104.0 205 37.6
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.7e-20 104.0 186 38.2
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.3e-20 103.6 253 32.8
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 2.9e-20 103.2 227 38.3
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.9e-20 103.2 255 36.9
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 2.9e-20 103.2 206 37.9
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 2.9e-20 103.2 192 37.0
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 2.9e-20 103.2 207 36.7
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.9e-20 103.2 191 39.3
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 3.8e-20 102.8 239 35.1
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.8e-20 102.8 223 34.5
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 5.0e-20 102.4 183 39.3
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 6.6e-20 102.1 254 35.4
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 6.6e-20 102.1 254 34.6
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 6.6e-20 102.1 218 36.7
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 6.6e-20 102.1 202 39.1
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 8.6e-20 101.7 204 39.7
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 8.6e-20 101.7 238 34.0
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 1.1e-19 101.3 188 38.3
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.9e-19 100.5 211 36.0
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 2.5e-19 100.1 205 36.1
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 3.3e-19 99.8 258 34.5
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 3.3e-19 99.8 186 38.2
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 4.3e-19 99.4 172 38.4
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 4.3e-19 99.4 211 35.1
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 5.6e-19 99.0 247 35.2
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 7.3e-19 98.6 247 34.0
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 9.5e-19 98.2 186 37.6
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.2e-18 97.8 247 33.2
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 1.6e-18 97.4 247 34.4
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.8e-18 96.7 192 36.5
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 3.6e-18 96.3 186 36.6
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 4.7e-18 95.9 247 33.2
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 4.7e-18 95.9 186 38.7
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 8.0e-18 95.1 186 37.1
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 2.3e-17 93.6 210 34.3
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 3.0e-17 93.2 199 37.2
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 5.2e-17 92.4 196 39.8
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 8.9e-17 91.7 166 38.6
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 3.4e-16 89.7 236 36.4
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 9.8e-16 88.2 159 36.5
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 5.4e-14 82.4 254 31.9
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 5.9e-13 79.0 103 45.6
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 1.0e-12 78.2 107 42.1
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 2.8e-10 70.1 171 32.2
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.0e-09 66.2 89 44.9
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 2.0e-08 63.9 82 48.8
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 5.8e-08 62.4 172 32.6
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 1.7e-07 60.8 69 44.9
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 4.9e-07 59.3 90 44.4
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 5.4e-06 55.8 190 26.8
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 5.4e-06 55.8 167 29.9
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 7.0e-06 55.5 105 34.3


User provided reference genes

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