Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 8.4e-100 367.1 193 100.0
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.9e-96 355.9 193 96.4
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 9.6e-96 353.6 193 97.4
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 7.9e-90 334.0 193 90.2
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.2e-82 310.1 195 86.2
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.4e-80 300.8 195 86.2
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 2.2e-71 272.7 195 79.0
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 1.6e-66 256.5 198 74.7
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 6.1e-66 254.6 198 73.7
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 7.4e-64 247.7 197 72.6
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 4.8e-63 245.0 202 73.3
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 1.0e-60 237.3 202 71.8
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 2.9e-60 235.7 197 71.1
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 7.2e-59 231.1 197 69.5
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 4.7e-58 228.4 204 68.1
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 6.1e-58 228.0 190 69.5
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 1.0e-57 227.3 194 67.5
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 1.8e-57 226.5 199 68.3
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 1.8e-57 226.5 199 69.3
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 2.3e-57 226.1 199 68.3
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 3.9e-57 225.3 198 68.2
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 5.2e-57 224.9 197 68.0
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 5.2e-57 224.9 192 67.2
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 5.2e-57 224.9 201 67.7
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.1e-56 223.8 172 72.1
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 1.5e-56 223.4 195 65.6
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 1.5e-56 223.4 196 66.3
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 2.0e-56 223.0 156 78.2
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 2.0e-56 223.0 196 66.3
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 2.0e-56 223.0 178 73.0
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.3e-56 222.2 196 68.4
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 3.3e-56 222.2 196 68.4
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 3.3e-56 222.2 142 83.8
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 5.7e-56 221.5 162 74.1
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 7.4e-56 221.1 170 72.9
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 7.4e-56 221.1 179 69.8
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 7.4e-56 221.1 197 65.0
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 9.7e-56 220.7 193 66.3
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.3e-55 220.3 143 78.3
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 1.3e-55 220.3 198 64.1
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.2e-55 219.5 139 79.9
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 2.8e-55 219.2 196 66.3
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 3.7e-55 218.8 176 69.9
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 4.8e-55 218.4 197 66.0
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 6.3e-55 218.0 197 64.0
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 6.3e-55 218.0 145 79.3
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 6.3e-55 218.0 195 65.1
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 6.3e-55 218.0 199 65.3
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 8.2e-55 217.6 198 66.2
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 1.1e-54 217.2 198 66.2
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 1.1e-54 217.2 192 67.2
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 1.8e-54 216.5 166 73.5
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.8e-54 216.5 179 69.3
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 2.4e-54 216.1 162 71.0
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 2.4e-54 216.1 202 64.9
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 3.1e-54 215.7 196 63.8
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 5.3e-54 214.9 190 66.8
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 5.3e-54 214.9 144 77.8
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 5.3e-54 214.9 193 63.7
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 5.3e-54 214.9 145 77.2
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 5.3e-54 214.9 137 81.8
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 7.0e-54 214.5 139 79.9
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 7.0e-54 214.5 137 83.9
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 1.2e-53 213.8 194 64.9
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 2.6e-53 212.6 198 64.1
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 2.6e-53 212.6 167 71.9
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.6e-53 212.6 196 62.8
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.6e-53 212.6 194 64.9
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 2.6e-53 212.6 139 79.1
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 3.5e-53 212.2 176 68.8
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 4.5e-53 211.8 184 69.0
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 7.7e-53 211.1 163 71.8
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 7.7e-53 211.1 173 70.5
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 7.7e-53 211.1 162 74.1
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.0e-52 210.7 168 70.8
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.0e-52 210.7 145 77.2
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 1.3e-52 210.3 148 77.0
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 1.3e-52 210.3 148 77.0
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.3e-52 210.3 177 64.4
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.3e-52 210.3 196 62.2
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 1.7e-52 209.9 147 76.9
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 1.7e-52 209.9 148 77.0
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 1.7e-52 209.9 148 77.0
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 1.7e-52 209.9 194 62.9
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.9e-52 209.1 195 64.1
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 6.5e-52 208.0 168 70.2
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 8.5e-52 207.6 190 64.2
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.1e-51 207.2 173 69.9
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.1e-51 207.2 197 61.4
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 1.1e-51 207.2 197 61.4
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 1.5e-51 206.8 138 79.7
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 1.9e-51 206.5 148 75.0
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 2.5e-51 206.1 195 63.6
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 2.5e-51 206.1 139 79.9
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 3.2e-51 205.7 193 62.7
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 4.2e-51 205.3 171 69.6
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 4.2e-51 205.3 196 62.8
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 4.2e-51 205.3 180 68.9
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 5.5e-51 204.9 166 71.7
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 5.5e-51 204.9 166 69.9
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 5.5e-51 204.9 181 66.9
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 7.2e-51 204.5 174 68.4
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 9.4e-51 204.1 197 62.9
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 9.4e-51 204.1 168 69.6
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 9.4e-51 204.1 196 61.7
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 9.4e-51 204.1 186 65.1
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 9.4e-51 204.1 195 61.5
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 1.2e-50 203.8 194 62.9
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 1.2e-50 203.8 142 75.4
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 1.2e-50 203.8 188 63.3
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.1e-50 203.0 194 65.5
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 6.1e-50 201.4 193 60.6
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 6.1e-50 201.4 172 67.4
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 2.3e-49 199.5 173 68.8
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 2.3e-49 199.5 167 68.3
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.2e-48 197.2 177 66.1
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 1.5e-48 196.8 145 75.9
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 2.0e-48 196.4 173 66.5
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 4.4e-48 195.3 179 65.4
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 7.5e-48 194.5 138 76.8
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 2.8e-47 192.6 142 73.2
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 3.7e-47 192.2 115 86.1
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 6.3e-47 191.4 189 61.4
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 1.1e-46 190.7 110 88.2
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.8e-46 189.9 183 59.6
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.4e-46 189.5 141 74.5
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 3.1e-46 189.1 174 63.2
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 5.3e-46 188.3 115 84.3
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 5.3e-46 188.3 115 84.3
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 5.3e-46 188.3 139 68.3
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 7.0e-46 188.0 164 66.5
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 2.0e-45 186.4 113 85.0
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 2.7e-45 186.0 189 61.4
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 4.5e-45 185.3 109 86.2
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 5.0e-44 181.8 139 68.3
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 8.5e-44 181.0 113 84.1
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 1.1e-43 180.6 197 56.9
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.5e-43 179.5 168 61.3
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 6.1e-42 174.9 183 57.9
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 8.0e-42 174.5 172 59.3
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 8.0e-42 174.5 108 77.8
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 3.0e-41 172.6 142 62.7
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 6.8e-41 171.4 192 53.6
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 7.5e-40 167.9 111 78.4
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.2e-39 166.4 196 53.1
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 7.0e-38 161.4 342 37.7
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.5e-37 159.1 169 57.4
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 3.5e-37 159.1 139 66.2
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 4.5e-37 158.7 110 71.8
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.7e-37 157.9 169 56.8
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 5.0e-36 155.2 153 63.4
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 1.5e-35 153.7 112 68.8
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 3.6e-34 149.1 142 64.1
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 1.5e-32 143.7 173 49.7
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.1e-26 123.2 160 51.9
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 8.0e-26 121.3 105 57.1
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 8.9e-25 117.9 139 46.0
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.8e-24 115.2 128 59.4
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 1.3e-23 114.0 75 80.0
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 7.0e-22 108.2 91 63.7
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 1.2e-21 107.5 94 61.7
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 4.6e-21 105.5 93 62.4
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 2.3e-20 103.2 87 65.5
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.5e-19 100.5 87 64.4
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.5e-19 100.5 87 64.4
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 2.9e-15 86.3 87 55.2
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 9.2e-14 81.3 44 95.5
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 3.0e-12 76.3 44 86.4
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 5.6e-11 72.0 49 77.6
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 1.5e-08 63.9 38 81.6


User provided reference genes

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