Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 0.0e+00 1459.5 743 100.0
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 0.0e+00 1425.6 743 97.6
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 0.0e+00 1293.1 755 88.2
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 0.0e+00 1291.9 755 87.7
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 0.0e+00 1245.7 750 85.7
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 0.0e+00 1224.2 761 84.2
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 0.0e+00 1075.1 764 73.6
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 3.3e-309 1064.7 767 72.8
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.6e-308 1062.4 753 72.5
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 6.8e-307 1057.0 799 70.1
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 6.8e-307 1057.0 767 71.3
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 8.3e-305 1050.0 759 70.9
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 9.2e-304 1046.6 776 70.5
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 9.2e-304 1046.6 754 70.8
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 3.0e-302 1041.6 754 70.6
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 3.9e-302 1041.2 750 70.5
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.6e-300 1035.8 753 71.2
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 2.8e-300 1035.0 750 70.7
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 2.8e-300 1035.0 767 69.9
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 2.8e-300 1035.0 750 69.9
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 4.4e-298 1027.7 755 69.9
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 1.1e-296 1023.1 762 68.5
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 1.9e-296 1022.3 527 98.7
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 1.2e-295 1019.6 747 69.9
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 1.0e-294 1016.5 757 69.2
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 3.9e-294 1014.6 753 68.7
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 6.6e-294 1013.8 765 68.1
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 8.6e-294 1013.4 747 68.8
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 1.1e-293 1013.1 765 67.2
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 1.9e-293 1012.3 747 68.7
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 2.5e-293 1011.9 748 69.1
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 7.3e-293 1010.4 756 69.3
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 2.1e-292 1008.8 755 68.1
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.1e-291 1006.5 743 70.0
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 2.3e-291 1005.4 753 68.3
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 5.2e-291 1004.2 753 67.7
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 2.6e-290 1001.9 763 67.5
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 3.4e-290 1001.5 753 68.3
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 4.4e-290 1001.1 755 67.9
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 5.8e-290 1000.7 755 67.8
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 5.8e-290 1000.7 753 68.1
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.8e-290 1000.0 754 69.0
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.3e-289 999.6 709 73.1
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 2.9e-289 998.4 763 68.3
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 2.9e-289 998.4 772 67.2
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 1.1e-288 996.5 748 68.0
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.1e-288 996.5 773 67.7
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.9e-288 995.7 753 67.9
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 3.2e-288 995.0 754 68.3
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 4.1e-288 994.6 751 67.2
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 5.4e-288 994.2 753 67.5
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 9.2e-288 993.4 753 67.7
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 1.2e-287 993.0 751 67.4
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 2.7e-287 991.9 753 68.0
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 6.0e-287 990.7 754 67.5
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 5.1e-286 987.6 745 69.4
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 4.3e-285 984.6 738 67.8
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 2.3e-283 978.8 755 67.0
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 4.0e-283 978.0 753 66.9
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 5.2e-283 977.6 760 66.3
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 5.2e-283 977.6 768 66.1
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 1.5e-282 976.1 740 67.3
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 3.4e-282 974.9 754 66.3
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 1.1e-280 969.9 748 67.0
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 1.4e-280 969.5 756 65.3
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 2.4e-280 968.8 753 66.3
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 3.2e-280 968.4 753 66.7
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 3.2e-280 968.4 749 66.8
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 4.6e-279 964.5 753 66.1
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.3e-278 963.0 752 66.9
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 5.1e-278 961.1 743 67.0
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 3.3e-277 958.4 753 66.0
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 9.6e-277 956.8 765 65.1
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 2.2e-273 945.7 766 65.3
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 1.4e-272 943.0 759 65.1
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 5.4e-272 941.0 752 63.6
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 3.5e-271 938.3 752 63.6
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 3.0e-270 935.3 752 64.9
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 3.9e-270 934.9 750 64.4
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 1.8e-267 926.0 754 63.8
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 3.1e-267 925.2 763 64.4
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 3.1e-267 925.2 763 64.4
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 6.9e-267 924.1 764 63.6
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 6.9e-267 924.1 764 63.6
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 9.0e-267 923.7 763 64.4
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 1.7e-265 919.5 754 63.7
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 1.7e-265 919.5 754 63.7
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 8.4e-265 917.1 756 63.4
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 1.1e-264 916.8 779 62.6
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 1.6e-263 912.9 763 63.8
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 1.6e-263 912.9 763 63.8
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 3.5e-263 911.8 758 62.8
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 3.0e-262 908.7 748 63.4
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 5.8e-258 894.4 760 62.9
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 2.1e-255 885.9 678 67.4
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 2.8e-252 875.5 726 61.6
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 7.6e-250 867.5 734 62.3
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 7.6e-250 867.5 747 61.8
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.1e-245 853.6 659 65.9
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 7.4e-245 850.9 757 58.9
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 3.7e-244 848.6 711 64.0
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 7.6e-242 840.9 740 59.6
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 3.8e-241 838.6 727 60.5
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 3.8e-241 838.6 751 58.9
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 2.1e-239 832.8 728 60.9
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 2.1e-239 832.8 728 60.9
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 4.6e-239 831.6 628 68.0
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.9e-237 826.2 814 56.0
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 7.7e-234 814.3 727 59.3
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 2.2e-233 812.8 525 77.3
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 6.7e-230 801.2 708 59.7
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 7.4e-221 771.2 528 73.3
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 3.2e-216 755.7 763 52.8
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 3.6e-215 752.3 533 69.4
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 4.1e-211 738.8 646 61.5
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 6.3e-204 714.9 691 56.2
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 4.1e-203 712.2 750 52.7
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.6e-199 700.3 760 50.8
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 3.6e-199 699.1 531 66.1
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 3.0e-198 696.0 742 49.7
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.3e-196 690.6 753 49.9
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.9e-186 655.2 732 48.4
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 3.3e-168 596.3 764 47.5
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 4.9e-148 529.3 619 47.7
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 3.4e-141 506.5 378 70.4
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 6.3e-127 459.1 345 65.5
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 9.3e-123 445.3 392 60.2
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 6.9e-118 429.1 712 36.8
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 3.1e-110 403.7 472 50.4
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 8.5e-92 342.4 757 29.6
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.6e-90 337.0 345 54.8
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 3.5e-85 320.5 840 30.0
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 7.8e-69 266.2 530 37.0
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 6.0e-61 240.0 225 60.4
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 4.2e-38 164.1 124 63.7
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 6.0e-37 160.2 215 48.4
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 6.0e-37 160.2 151 56.3
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.2e-32 146.0 102 66.7
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.2e-29 136.0 175 49.1
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 1.0e-28 132.9 113 61.9
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 4.3e-27 127.5 210 39.5
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 6.2e-26 123.6 93 68.8
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 8.1e-26 123.2 199 40.2
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 1.8e-25 122.1 218 37.6
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 5.5e-22 110.5 219 37.4
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 2.3e-20 105.1 116 52.6
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 7.4e-19 100.1 117 51.3
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 7.4e-19 100.1 93 53.8
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 1.6e-18 99.0 298 28.2
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.1e-18 98.6 63 73.0
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 4.0e-17 94.4 92 54.3
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 7.6e-16 90.1 112 45.5
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 7.4e-11 73.6 79 53.2
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 1.6e-10 72.4 56 64.3
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.2e-10 72.0 65 56.9
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 1.1e-09 69.7 101 43.6
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 5.9e-08 63.9 67 52.2
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 2.9e-07 61.6 63 52.4
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 5.0e-07 60.8 63 52.4
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 5.0e-07 60.8 63 52.4
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 3.2e-06 58.2 63 50.8


User provided reference genes

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