Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 2.6e-32 141.4 68 100.0
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 1.7e-31 138.7 68 97.1
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 2.9e-23 111.3 66 83.3
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 2.1e-21 105.1 64 82.8
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 3.6e-21 104.4 62 82.3
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 4.7e-21 104.0 58 81.0
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 2.3e-20 101.7 63 77.8
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 4.0e-20 100.9 62 80.6
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.8e-20 100.1 65 75.4
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.8e-20 100.1 66 74.2
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.8e-20 100.1 65 75.4
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 6.8e-20 100.1 59 74.6
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 6.8e-20 100.1 59 74.6
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 8.8e-20 99.8 62 75.8
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 1.2e-19 99.4 62 77.4
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 1.5e-19 99.0 57 78.9
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 2.0e-19 98.6 64 76.6
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 2.6e-19 98.2 62 75.8
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 2.6e-19 98.2 64 76.6
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 3.4e-19 97.8 62 75.8
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 3.4e-19 97.8 59 76.3
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 3.4e-19 97.8 62 75.8
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 4.4e-19 97.4 64 76.6
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 4.4e-19 97.4 62 75.8
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 4.4e-19 97.4 62 75.8
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 5.7e-19 97.1 63 73.0
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 5.7e-19 97.1 63 73.0
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 5.7e-19 97.1 63 73.0
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 5.7e-19 97.1 63 73.0
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 5.7e-19 97.1 62 74.2
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 5.7e-19 97.1 62 75.8
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 5.7e-19 97.1 62 75.8
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 5.7e-19 97.1 62 75.8
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 5.7e-19 97.1 62 75.8
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 5.7e-19 97.1 57 77.2
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 5.7e-19 97.1 62 74.2
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 5.7e-19 97.1 62 74.2
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 7.5e-19 96.7 61 72.1
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 7.5e-19 96.7 62 74.2
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 9.7e-19 96.3 62 74.2
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 1.3e-18 95.9 62 72.6
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 1.7e-18 95.5 62 74.2
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 2.8e-18 94.7 62 72.6
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 2.8e-18 94.7 59 74.6
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 3.7e-18 94.4 62 74.2
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 3.7e-18 94.4 64 73.4
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.8e-18 94.0 66 71.2
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 4.8e-18 94.0 64 73.4
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 4.8e-18 94.0 61 75.4
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 4.8e-18 94.0 61 75.4
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 4.8e-18 94.0 63 69.8
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 6.3e-18 93.6 64 70.3
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 8.3e-18 93.2 63 71.4
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 1.1e-17 92.8 63 69.8
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 1.4e-17 92.4 61 75.4
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 1.4e-17 92.4 62 72.6
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 1.4e-17 92.4 64 68.8
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 1.4e-17 92.4 64 68.8
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 1.8e-17 92.0 63 69.8
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 2.4e-17 91.7 57 71.9
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 3.1e-17 91.3 63 69.8
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 4.1e-17 90.9 68 66.2
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 4.1e-17 90.9 62 69.4
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 7.0e-17 90.1 56 69.6
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 7.0e-17 90.1 62 69.4
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 7.0e-17 90.1 62 69.4
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 9.1e-17 89.7 57 71.9
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 1.6e-16 89.0 61 68.9
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 3.5e-16 87.8 62 69.4
Solyc08g006570.4 Solanum lycopersicum HOM05D007316 ORTHO05D009393 4.5e-16 87.4 41 97.6
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 1.0e-15 86.3 78 59.0
Os07g0633800 Oryza sativa ssp. japonica HOM05D007316 ORTHO05D009393 1.0e-15 86.3 65 61.5
ECA236G4186 Erigeron canadensis HOM05D007316 ORTHO05D009393 1.1e-14 82.8 58 69.0
CAN.G530.4 Capsicum annuum HOM05D007316 ORTHO05D009393 1.5e-14 82.4 43 90.7
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 3.4e-11 71.2 57 64.9
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 4.4e-11 70.9 45 75.6
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 7.5e-11 70.1 61 60.7
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 4.8e-10 67.4 52 63.5
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 4.8e-10 67.4 46 69.6
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 1.1e-09 66.2 44 75.0
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 1.1e-09 66.2 46 69.6
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 5.4e-09 63.9 46 69.6
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 5.4e-09 63.9 46 69.6
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.0e-09 63.5 45 68.9
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.0e-09 63.5 46 67.4
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.0e-09 63.5 46 67.4
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.0e-09 63.5 46 67.4
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 1.2e-08 62.8 36 86.1
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.2e-08 62.8 41 68.3
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.0e-08 62.0 41 68.3
MCO03G596 Micromonas commoda HOM05D007316 ORTHO05D009393 7.7e-08 60.1 54 46.3
EL10Ac8g18312 Beta vulgaris HOM05D007316 ORTHO05D009393 1.0e-07 59.7 46 56.5
Gorai.013G118500 Gossypium raimondii HOM05D007316 ORTHO05D009393 2.9e-07 58.2 62 53.2
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 5.0e-07 57.4 50 52.0
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 6.6e-07 57.0 41 53.7
Mapoly0010s0075 Marchantia polymorpha HOM05D007316 ORTHO05D009393 6.6e-07 57.0 54 44.4
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 1.1e-06 56.2 45 60.0
Gohir.A13G102600 Gossypium hirsutum HOM05D007316 ORTHO05D009393 7.2e-06 53.5 62 50.0


User provided reference genes

Program Settings