Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 8.0e-144 514.6 325 100.0
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 2.5e-121 439.9 324 89.2
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 3.3e-121 439.5 324 88.3
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 2.6e-118 429.9 211 98.1
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 1.3e-117 427.6 324 87.0
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 3.5e-115 419.5 211 95.3
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 7.8e-107 391.7 211 88.2
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 1.8e-98 364.0 275 68.7
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 9.1e-71 271.9 213 62.9
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 1.4e-63 248.1 307 63.2
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 1.3e-61 241.5 332 60.8
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 2.2e-61 240.7 168 64.9
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 3.2e-60 236.9 195 56.9
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 2.7e-59 233.8 217 54.4
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 6.1e-59 232.6 212 56.1
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 1.1e-57 228.4 169 62.1
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 2.0e-57 227.6 321 58.9
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 2.2e-56 224.2 202 52.5
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 3.7e-56 223.4 217 49.8
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 2.4e-55 220.7 163 58.9
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 3.1e-55 220.3 285 61.8
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 9.1e-55 218.8 189 56.6
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 1.2e-54 218.4 208 55.3
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 2.0e-54 217.6 211 51.2
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 2.6e-54 217.2 215 48.8
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 4.5e-54 216.5 175 57.7
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 7.7e-54 215.7 218 48.2
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 7.7e-54 215.7 231 46.8
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 7.7e-54 215.7 205 49.3
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 1.3e-53 214.9 165 57.0
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 1.7e-53 214.5 205 50.2
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 1.7e-53 214.5 158 59.5
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 2.9e-53 213.8 175 56.6
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 3.8e-53 213.4 315 56.5
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 5.0e-53 213.0 147 64.6
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 8.5e-53 212.2 204 53.4
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.1e-52 211.8 208 52.4
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 1.9e-52 211.1 205 52.2
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 2.5e-52 210.7 174 54.6
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 4.2e-52 209.9 174 54.0
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 5.5e-52 209.5 203 49.3
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 7.2e-52 209.1 213 52.1
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 1.2e-51 208.4 173 57.2
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 2.7e-51 207.2 201 49.8
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 6.1e-51 206.1 161 55.9
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 1.4e-50 204.9 178 54.5
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 1.4e-50 204.9 140 64.3
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 3.0e-50 203.8 224 46.0
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 5.2e-50 203.0 256 64.5
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 5.2e-50 203.0 213 48.4
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 1.2e-49 201.8 206 47.1
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 1.2e-49 201.8 216 46.3
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 9.7e-49 198.7 173 53.2
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 1.3e-48 198.4 208 47.6
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 6.3e-48 196.1 283 59.7
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 1.1e-47 195.3 216 44.0
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 1.8e-47 194.5 179 52.5
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 1.2e-46 191.8 169 52.7
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 3.5e-46 190.3 190 48.9
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 5.9e-46 189.5 176 48.9
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 5.9e-46 189.5 204 48.0
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 5.9e-46 189.5 179 52.0
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.0e-45 188.7 205 44.9
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 3.8e-45 186.8 148 56.1
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 6.5e-45 186.0 147 56.5
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 8.5e-45 185.7 161 52.8
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 8.5e-45 185.7 200 45.0
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 1.1e-44 185.3 202 43.6
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 1.1e-44 185.3 202 43.6
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 1.5e-44 184.9 192 47.4
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 3.2e-44 183.7 163 50.9
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 9.4e-44 182.2 145 56.6
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 1.6e-43 181.4 145 56.6
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 4.0e-42 176.8 140 55.7
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 2.2e-40 171.0 151 53.0
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 2.2e-40 171.0 151 53.0
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 2.8e-40 170.6 209 42.6
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 1.4e-39 168.3 216 40.7
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 1.8e-39 167.9 146 54.1
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 1.8e-39 167.9 151 53.0
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 7.0e-39 166.0 151 51.0
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 9.1e-39 165.6 212 41.5
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 2.0e-38 164.5 146 52.7
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 2.7e-38 164.1 176 46.0
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 4.5e-38 163.3 147 51.0
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.7e-37 161.4 115 63.5
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 6.5e-37 159.5 188 43.1
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 2.5e-36 157.5 107 68.2
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 4.7e-35 153.3 148 48.6
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 3.0e-34 150.6 191 41.9
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 4.4e-33 146.7 207 40.1
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 1.1e-31 142.1 107 61.7
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 1.4e-31 141.7 107 62.6
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.8e-31 141.4 107 62.6
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 4.1e-31 140.2 107 59.8
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 2.3e-29 134.4 219 36.5
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 2.9e-29 134.0 209 36.8
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 8.6e-29 132.5 85 67.1
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 2.3e-26 124.4 109 50.5
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 2.3e-26 124.4 147 41.5
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.4e-23 115.2 314 28.7
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 3.4e-17 94.0 292 26.0
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 1.4e-07 62.0 52 55.8
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 4.1e-07 60.5 187 22.5
Sc17g0001920 Simmondsia chinensis HOM05D007486 ORTHO05D003673 4.6e-06 57.0 158 27.8
DCAR_018726 Daucus carota HOM05D007172 ORTHO05D009267 7.8e-06 56.2 149 25.5


User provided reference genes

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