Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 1.9e-70 269.2 154 100.0
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.4e-65 253.1 161 92.5
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.9e-62 242.7 157 93.0
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.3e-60 235.7 161 86.3
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.5e-59 233.0 161 85.1
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 4.9e-58 228.0 161 83.9
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.0e-47 193.7 161 77.0
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.5e-46 189.9 161 75.8
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 8.6e-39 164.1 159 66.7
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.9e-38 162.9 161 64.0
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.3e-38 162.2 152 68.4
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 1.6e-37 159.8 120 85.0
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.3e-36 156.0 178 62.9
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 3.1e-36 155.6 160 63.1
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 6.8e-36 154.5 153 64.7
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 6.8e-36 154.5 179 60.3
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 6.8e-36 154.5 162 63.0
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 8.9e-36 154.1 144 69.4
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 1.5e-35 153.3 161 62.7
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.6e-32 143.3 163 61.3
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.1e-30 137.1 152 61.8
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.9e-30 136.3 157 58.6
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 5.6e-30 134.8 162 61.1
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.2e-29 133.7 160 59.4
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.1e-29 132.9 144 61.8
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 2.4e-28 129.4 154 59.1
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 3.4e-27 125.6 161 57.8
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 4.4e-27 125.2 163 59.5
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 5.8e-27 124.8 161 58.4
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 5.8e-27 124.8 160 55.0
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 1.7e-26 123.2 194 50.0
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 2.2e-26 122.9 100 76.0
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 1.2e-24 117.1 104 70.2
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.6e-24 116.7 127 65.4
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 4.6e-24 115.2 161 56.5
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 6.0e-24 114.8 166 53.6
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 1.3e-23 113.6 100 75.0
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.3e-23 113.6 162 54.9
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 1.7e-23 113.2 100 75.0
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.7e-23 113.2 172 48.8
Nitab4.5_0010352g0020 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.7e-23 113.2 177 51.4
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 1.7e-23 113.2 152 55.9
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 2.3e-23 112.8 99 75.8
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 3.0e-23 112.5 158 55.1
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 3.0e-23 112.5 180 50.6
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 3.9e-23 112.1 124 65.3
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 6.6e-23 111.3 101 74.3
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 8.7e-23 110.9 100 75.0
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.5e-22 110.2 121 66.1
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.5e-22 110.2 124 64.5
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 1.5e-22 110.2 170 50.0
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 2.5e-22 109.4 97 77.3
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 2.5e-22 109.4 97 77.3
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 3.3e-22 109.0 127 62.2
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 3.3e-22 109.0 169 47.9
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 7.3e-22 107.8 161 54.0
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 9.6e-22 107.5 127 62.2
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 9.6e-22 107.5 109 67.9
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 1.3e-21 107.1 154 55.2
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 1.6e-21 106.7 167 53.9
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 1.6e-21 106.7 99 74.7
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.1e-21 106.3 100 74.0
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.8e-21 105.9 208 46.6
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 2.8e-21 105.9 160 52.5
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 2.8e-21 105.9 99 65.7
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 2.8e-21 105.9 167 48.5
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 3.6e-21 105.5 128 62.5
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 3.6e-21 105.5 179 48.6
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 4.8e-21 105.1 102 73.5
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 6.2e-21 104.8 154 55.2
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 6.2e-21 104.8 154 55.2
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 6.2e-21 104.8 154 55.2
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 8.1e-21 104.4 97 74.2
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 1.1e-20 104.0 130 61.5
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.1e-20 104.0 154 54.5
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 1.4e-20 103.6 132 54.5
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 2.4e-20 102.8 103 71.8
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 2.4e-20 102.8 103 71.8
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 3.1e-20 102.4 116 66.4
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 3.1e-20 102.4 114 65.8
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 4.0e-20 102.1 103 71.8
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 4.0e-20 102.1 136 53.7
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 4.0e-20 102.1 173 52.6
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 6.9e-20 101.3 103 71.8
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 1.2e-19 100.5 103 70.9
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.2e-19 100.5 101 69.3
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 1.5e-19 100.1 172 47.7
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.6e-19 99.4 171 44.4
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 3.4e-19 99.0 181 45.3
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 4.4e-19 98.6 120 63.3
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 5.8e-19 98.2 170 51.2
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 7.6e-19 97.8 111 63.1
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 7.6e-19 97.8 150 49.3
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 9.9e-19 97.4 166 45.2
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.7e-18 96.7 132 51.5
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.9e-18 95.9 135 53.3
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 3.8e-18 95.5 171 43.9
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 4.9e-18 95.1 155 50.3
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 6.4e-18 94.7 87 69.0
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 8.4e-18 94.4 164 44.5
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 8.4e-18 94.4 171 43.3
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.1e-17 94.0 101 56.4
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.4e-17 93.6 95 69.5
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 1.4e-17 93.6 161 51.6
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 1.4e-17 93.6 57 78.9
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 3.2e-17 92.4 115 53.0
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 3.2e-17 92.4 115 53.0
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.4e-17 91.7 171 43.3
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 9.3e-17 90.9 93 59.1
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 1.2e-16 90.5 103 68.0
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 1.2e-16 90.5 103 68.0
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 1.2e-16 90.5 102 55.9
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 1.2e-16 90.5 91 60.4
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 1.6e-16 90.1 101 54.5
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 1.6e-16 90.1 137 49.6
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 4.6e-16 88.6 102 54.9
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 4.6e-16 88.6 101 59.4
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 7.9e-16 87.8 102 54.9
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.7e-15 86.7 181 45.3
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 2.3e-15 86.3 93 61.3
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 3.0e-15 85.9 101 53.5
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 3.0e-15 85.9 101 53.5
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 3.9e-15 85.5 100 56.0
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.5e-14 83.6 93 61.3
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 4.3e-14 82.0 119 54.6
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 4.3e-14 82.0 105 61.9
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 4.3e-14 82.0 96 60.4
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 5.6e-14 81.6 121 52.1
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.8e-12 76.6 93 59.1
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.8e-12 76.6 96 59.4
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.1e-12 75.9 131 48.9
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 4.5e-11 72.0 98 54.1
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 9.9e-11 70.9 178 39.3
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 8.4e-10 67.8 78 52.6
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 1.1e-09 67.4 165 39.4
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.1e-09 67.4 67 65.7
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 1.1e-09 67.4 102 48.0
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.4e-09 66.2 114 51.8
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.2e-09 65.5 61 62.3
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 5.5e-09 65.1 115 50.4
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 9.3e-09 64.3 114 50.9
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.2e-08 63.9 80 56.2
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.1e-08 63.2 118 49.2
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.1e-08 63.2 68 58.8
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.6e-08 62.0 68 58.8
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 1.0e-07 60.8 115 44.3
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.8e-07 60.1 64 60.9
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 3.9e-07 58.9 107 52.3
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 8.7e-07 57.8 139 40.3
Peaxi162Scf03243g00002 Petunia axillaris HOM05D004577 ORTHO05D005062 8.7e-07 57.8 113 43.4
Sabra11G0141000 Salix brachista HOM05D002312 ORTHO05D006455 8.7e-07 57.8 101 41.6
Duzib268G0228 Durio zibethinus HOM05D004577 ORTHO05D005062 1.5e-06 57.0 96 39.6
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 1.9e-06 56.6 148 38.5
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 2.5e-06 56.2 102 46.1
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 5.6e-06 55.1 82 48.8
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 5.6e-06 55.1 116 47.4


User provided reference genes

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