Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 2.4e-122 442.2 224 100.0
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 2.4e-122 442.2 224 100.0
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 6.9e-122 440.7 224 99.1
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 2.1e-118 429.1 224 96.0
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.1e-116 423.3 224 95.1
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 4.4e-116 421.4 224 94.6
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 6.8e-101 370.9 224 81.2
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 6.3e-99 364.4 222 79.7
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.1e-98 363.6 224 79.9
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 2.4e-98 362.5 223 79.4
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 3.1e-98 362.1 222 79.7
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 1.2e-97 360.1 222 78.8
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 4.5e-97 358.2 214 82.7
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.7e-96 356.3 224 76.3
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 3.8e-96 355.1 225 79.1
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 5.0e-96 354.8 223 78.0
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 8.5e-96 354.0 225 78.2
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.1e-95 353.6 223 77.6
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 1.5e-95 353.2 224 75.0
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 3.2e-95 352.1 225 76.9
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 4.2e-95 351.7 221 79.2
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.2e-94 350.1 223 76.7
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 1.2e-94 350.1 209 81.3
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 4.7e-94 348.2 222 77.0
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 6.1e-94 347.8 224 76.3
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 8.0e-94 347.4 216 78.7
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.0e-93 347.1 220 78.2
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-93 346.7 222 75.7
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 1.4e-93 346.7 220 79.5
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 1.8e-93 346.3 224 76.8
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 2.3e-93 345.9 218 77.5
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 4.0e-93 345.1 219 76.7
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 4.0e-93 345.1 217 77.9
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 5.2e-93 344.7 220 74.5
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 5.2e-93 344.7 220 75.0
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 5.2e-93 344.7 225 74.7
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 5.2e-93 344.7 207 81.2
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 6.8e-93 344.4 225 75.6
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 6.8e-93 344.4 214 78.0
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 8.8e-93 344.0 221 75.6
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 1.5e-92 343.2 229 73.4
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 1.5e-92 343.2 227 74.4
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 1.5e-92 343.2 223 76.2
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 3.4e-92 342.0 225 74.7
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 4.4e-92 341.7 225 76.0
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 4.4e-92 341.7 220 76.4
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 4.4e-92 341.7 225 75.1
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 5.7e-92 341.3 220 75.9
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 7.5e-92 340.9 225 75.1
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 7.5e-92 340.9 215 79.1
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 7.5e-92 340.9 223 75.8
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 1.3e-91 340.1 237 72.2
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.3e-91 340.1 219 75.8
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 1.3e-91 340.1 225 75.1
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.3e-91 340.1 226 74.8
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.3e-91 340.1 218 77.1
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.7e-91 339.7 225 74.7
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.7e-91 339.7 226 74.8
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.7e-91 339.7 227 75.3
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.7e-91 339.7 219 75.8
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 2.2e-91 339.3 225 74.2
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 2.2e-91 339.3 220 75.5
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 2.8e-91 339.0 223 75.8
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 2.8e-91 339.0 220 74.5
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.9e-91 338.2 226 74.3
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 6.3e-91 337.8 219 74.9
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 6.3e-91 337.8 225 76.0
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 8.3e-91 337.4 222 74.3
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 8.3e-91 337.4 226 74.8
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 8.3e-91 337.4 221 74.7
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 8.3e-91 337.4 225 74.2
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 1.1e-90 337.0 227 74.4
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.4e-90 336.7 224 74.1
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.4e-90 336.7 204 79.9
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.8e-90 336.3 223 72.6
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.8e-90 336.3 223 73.5
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 2.4e-90 335.9 222 74.8
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 4.1e-90 335.1 222 74.3
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 4.1e-90 335.1 220 75.0
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 4.1e-90 335.1 223 71.7
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 5.4e-90 334.7 219 74.4
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 5.4e-90 334.7 219 74.9
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 1.2e-89 333.6 220 74.1
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.6e-89 333.2 220 74.1
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 4.5e-89 331.6 224 77.2
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 5.9e-89 331.3 220 73.6
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 1.0e-88 330.5 224 71.9
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 1.3e-88 330.1 217 72.8
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.7e-88 329.7 224 72.8
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 2.3e-88 329.3 214 73.8
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 5.0e-88 328.2 214 74.3
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 6.6e-88 327.8 224 71.9
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 6.6e-88 327.8 214 74.3
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.9e-87 326.2 222 72.5
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.9e-87 326.2 222 72.5
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 4.3e-87 325.1 218 73.9
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 7.3e-87 324.3 212 72.6
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 1.2e-86 323.6 218 72.0
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 2.8e-86 322.4 225 69.3
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 2.3e-85 319.3 224 69.2
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 3.0e-85 318.9 206 74.3
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 3.0e-85 318.9 217 70.0
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 3.0e-85 318.9 224 68.8
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 1.2e-84 317.0 219 73.1
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 1.2e-84 317.0 202 77.2
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 2.0e-84 316.2 205 75.1
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 3.4e-84 315.5 201 77.1
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 5.7e-84 314.7 223 69.1
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 7.5e-84 314.3 200 77.0
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 1.7e-83 313.2 211 75.4
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 1.8e-82 309.7 202 72.8
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 7.0e-82 307.8 208 73.6
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 7.0e-82 307.8 208 73.6
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 1.2e-81 307.0 202 71.3
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 3.5e-81 305.4 205 70.7
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.6e-81 305.1 226 68.6
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.3e-80 303.5 226 68.6
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 3.9e-80 302.0 201 75.1
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 5.0e-80 301.6 223 67.3
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 2.5e-79 299.3 186 79.0
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 4.3e-79 298.5 236 65.3
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.2e-78 297.0 200 71.0
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 2.1e-78 296.2 210 67.6
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.0e-77 293.9 262 60.3
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 1.4e-77 293.5 224 67.4
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 1.8e-77 293.1 221 65.2
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 3.1e-77 292.4 240 62.5
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 1.2e-76 290.4 225 69.3
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 3.4e-76 288.9 214 66.8
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 5.8e-76 288.1 219 67.1
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.7e-75 286.6 201 72.1
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 3.5e-73 278.9 223 63.7
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.5e-73 278.9 232 63.8
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 5.0e-72 275.0 221 66.5
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 1.9e-71 273.1 208 65.4
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.3e-71 272.3 223 64.6
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 2.0e-68 263.1 173 75.7
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 1.3e-67 260.4 159 80.5
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.2e-67 259.6 211 64.9
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 2.2e-67 259.6 196 66.8
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 8.6e-64 247.7 204 63.2
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.3e-63 245.7 186 68.3
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 1.2e-62 243.8 224 56.2
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.6e-62 243.4 156 77.6
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 6.2e-62 241.5 221 61.5
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 8.1e-62 241.1 201 64.2
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.8e-61 240.0 221 60.2
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 3.1e-61 239.2 214 58.9
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 6.8e-61 238.0 211 60.2
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 7.6e-60 234.6 219 58.9
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 3.7e-59 232.3 225 58.2
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 4.6e-57 225.3 149 77.2
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 3.3e-55 219.2 152 74.3
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 1.8e-53 213.4 211 54.0
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-50 204.1 226 52.7
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 3.1e-45 186.0 235 46.4
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 2.4e-42 176.4 182 56.6
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 3.5e-41 172.6 236 43.6
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 6.6e-40 168.3 112 76.8
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 1.8e-37 160.2 216 44.4
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.4e-36 156.0 231 42.0
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 5.5e-34 148.7 109 67.9
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.2e-33 147.5 102 68.6
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 2.7e-33 146.4 94 74.5
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 3.0e-32 142.9 114 67.5
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 9.0e-29 131.3 157 44.6
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.4e-26 124.0 114 58.8
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 5.5e-26 122.1 78 74.4
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 6.5e-19 98.6 79 62.0
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 3.0e-16 89.7 76 57.9
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 3.0e-16 89.7 201 31.3
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.1e-13 79.7 70 58.6
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.5e-12 77.4 105 49.5
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.1e-07 61.2 74 51.4
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 2.6e-07 60.1 40 62.5
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 8.2e-06 55.1 70 42.9


User provided reference genes

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