Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 4.6e-71 271.2 141 100.0
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 8.6e-70 266.9 141 97.2
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 5.2e-67 257.7 141 94.3
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 2.1e-60 235.7 141 85.1
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 9.0e-59 230.3 141 84.4
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 2.2e-57 225.7 141 83.7
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 8.4e-57 223.8 141 81.6
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 1.4e-56 223.0 141 80.9
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 2.4e-56 222.2 141 80.1
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 4.2e-56 221.5 141 80.9
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 3.3e-53 211.8 141 77.3
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 4.8e-52 208.0 138 76.8
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 3.8e-49 198.4 142 74.6
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 2.4e-48 195.7 142 71.1
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 4.2e-48 194.9 142 69.7
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 7.1e-48 194.1 142 71.1
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.6e-47 193.0 142 71.1
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.6e-47 193.0 142 71.1
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 2.7e-47 192.2 142 71.1
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 7.9e-47 190.7 141 71.6
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 1.8e-46 189.5 142 69.7
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 2.3e-46 189.1 143 70.6
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 3.9e-46 188.3 142 69.7
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 6.7e-46 187.6 144 68.1
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 8.7e-46 187.2 134 73.1
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 1.9e-45 186.0 141 68.1
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 2.5e-45 185.7 142 69.7
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 2.5e-45 185.7 141 70.9
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 2.5e-45 185.7 122 77.0
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 2.5e-45 185.7 124 77.4
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 4.3e-45 184.9 142 69.0
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 9.6e-45 183.7 141 68.1
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 1.6e-44 183.0 141 68.8
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 1.6e-44 183.0 130 73.8
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 1.6e-44 183.0 130 73.8
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 1.6e-44 183.0 141 68.8
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 2.1e-44 182.6 154 64.9
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 3.7e-44 181.8 142 68.3
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 4.8e-44 181.4 133 72.9
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 6.2e-44 181.0 144 67.4
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 6.2e-44 181.0 144 67.4
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 6.2e-44 181.0 141 67.4
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 6.2e-44 181.0 142 68.3
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 6.2e-44 181.0 141 70.9
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 6.2e-44 181.0 136 70.6
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 6.2e-44 181.0 141 69.5
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 8.1e-44 180.6 141 66.7
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 8.1e-44 180.6 130 73.1
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 8.1e-44 180.6 138 68.8
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 1.1e-43 180.3 147 66.7
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 1.1e-43 180.3 141 68.8
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 1.4e-43 179.9 142 68.3
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 3.1e-43 178.7 142 68.3
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 4.0e-43 178.3 142 67.6
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 5.3e-43 177.9 166 60.2
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 6.9e-43 177.6 134 70.1
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 6.9e-43 177.6 134 70.1
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 1.2e-42 176.8 141 70.2
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.6e-42 175.6 141 68.8
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 2.6e-42 175.6 146 64.4
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 2.6e-42 175.6 141 68.1
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 4.5e-42 174.9 142 66.2
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 7.6e-42 174.1 142 66.9
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 1.0e-41 173.7 135 68.1
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 1.3e-41 173.3 141 65.2
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 1.7e-41 172.9 141 66.0
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 2.2e-41 172.6 142 65.5
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 2.2e-41 172.6 141 66.0
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 2.9e-41 172.2 142 65.5
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 4.9e-41 171.4 116 77.6
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 6.5e-41 171.0 119 73.1
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 1.1e-40 170.2 136 68.4
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 1.4e-40 169.9 143 67.1
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 1.4e-40 169.9 147 63.9
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 1.4e-40 169.9 111 80.2
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 3.2e-40 168.7 135 67.4
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 9.3e-40 167.2 119 73.1
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 9.3e-40 167.2 119 72.3
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 9.3e-40 167.2 124 70.2
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 1.2e-39 166.8 143 63.6
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 1.6e-39 166.4 145 61.4
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 1.6e-39 166.4 145 61.4
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 1.6e-39 166.4 146 63.7
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 1.6e-39 166.4 146 61.0
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.1e-39 166.0 119 72.3
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 2.1e-39 166.0 134 64.9
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 2.7e-39 165.6 143 62.2
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 3.5e-39 165.2 119 71.4
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 3.0e-38 162.2 119 70.6
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 3.0e-38 162.2 142 62.7
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 5.1e-38 161.4 163 58.3
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 1.9e-37 159.5 121 69.4
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 9.6e-37 157.1 150 57.3
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 4.8e-36 154.8 128 68.0
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 4.8e-36 154.8 142 59.9
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 2.4e-35 152.5 149 57.7
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 1.0e-33 147.1 141 58.9
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 2.2e-33 146.0 118 66.1
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 4.2e-32 141.7 119 64.7
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 1.5e-29 133.3 118 61.0
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 2.8e-28 129.0 114 62.3
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 6.3e-28 127.9 121 54.5
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 1.1e-27 127.1 128 59.4
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 1.4e-27 126.7 85 74.1
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 2.4e-27 125.9 128 58.6
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 2.4e-27 125.9 128 58.6
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 4.1e-27 125.2 128 58.6
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 4.1e-27 125.2 128 58.6
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 4.1e-27 125.2 121 57.9
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 9.1e-27 124.0 125 58.4
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 1.5e-26 123.2 83 77.1
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 2.0e-26 122.9 104 67.3
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 2.6e-26 122.5 119 56.3
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 3.4e-26 122.1 125 58.4
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 5.9e-26 121.3 95 69.5
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 1.0e-25 120.6 117 53.8
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 1.0e-25 120.6 93 71.0
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 1.7e-25 119.8 128 57.0
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 2.2e-25 119.4 97 67.0
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 2.9e-25 119.0 79 74.7
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 7.2e-24 114.4 112 58.0
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 2.1e-23 112.8 150 46.7
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 1.8e-22 109.8 124 49.2
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 5.1e-22 108.2 70 77.1
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 2.2e-20 102.8 73 74.0
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 6.3e-20 101.3 115 47.8
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 6.3e-20 101.3 88 56.8
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 4.1e-19 98.6 162 40.7
Manes.01G220201 Manihot esculenta HOM05D005449 ORTHO05D006916 7.4e-13 77.8 86 51.2
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 9.7e-13 77.4 111 44.1
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 8.2e-12 74.3 91 50.5
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 9.1e-11 70.9 85 52.9
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.9e-08 63.2 63 52.4
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 4.0e-06 55.5 35 74.3


User provided reference genes

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