Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 1.9e-217 758.8 376 100.0
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.1e-211 738.8 376 98.4
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 1.1e-201 706.4 379 94.5
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 1.6e-187 659.4 379 87.9
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.3e-185 651.4 382 85.9
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.2e-184 647.1 380 85.8
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 5.1e-178 627.9 376 84.0
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 3.3e-169 598.6 381 78.5
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.4e-167 592.4 382 78.8
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 5.3e-167 591.3 367 80.7
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 7.0e-167 590.9 381 77.7
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 8.5e-165 583.9 400 75.0
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 3.2e-164 582.0 403 73.7
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 6.1e-163 577.8 379 77.0
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 8.0e-163 577.4 379 75.7
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.0e-162 577.0 383 76.2
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.4e-162 576.6 375 77.1
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 3.0e-162 575.5 379 76.5
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 4.0e-162 575.1 379 75.7
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 6.8e-162 574.3 309 88.7
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 6.8e-162 574.3 377 77.7
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.5e-161 573.2 379 76.3
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.6e-161 572.4 381 76.4
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 7.5e-161 570.9 374 77.0
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 6.3e-160 567.8 373 76.1
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 8.3e-160 567.4 377 76.7
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 8.3e-160 567.4 376 76.1
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.4e-159 566.6 379 74.9
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.8e-159 566.2 379 74.9
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.8e-159 566.2 378 75.1
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.8e-159 566.2 380 75.0
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 2.4e-159 565.8 374 75.1
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 4.1e-159 565.1 346 79.5
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 7.0e-159 564.3 381 74.5
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 7.0e-159 564.3 377 76.1
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 9.1e-159 563.9 381 75.3
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 1.2e-158 563.5 376 75.3
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.6e-158 563.1 377 74.8
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 2.0e-158 562.8 380 74.7
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 2.0e-158 562.8 379 76.3
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 7.7e-158 560.8 335 79.4
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.3e-157 560.1 374 74.1
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 8.5e-157 557.4 320 84.7
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 3.2e-156 555.4 380 74.5
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 7.2e-156 554.3 379 74.9
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.2e-155 553.5 379 74.9
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.6e-155 553.1 379 71.5
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.6e-155 553.1 368 76.4
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 2.1e-155 552.7 368 75.8
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 2.7e-155 552.4 379 74.7
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 3.6e-155 552.0 378 73.5
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 3.6e-155 552.0 382 73.0
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 4.7e-155 551.6 357 76.5
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 4.7e-155 551.6 318 82.4
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 4.7e-155 551.6 380 72.6
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 6.1e-155 551.2 379 74.7
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 1.0e-154 550.4 382 72.8
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.4e-154 550.1 378 73.8
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 2.3e-154 549.3 382 73.6
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 3.0e-154 548.9 379 74.4
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 5.2e-154 548.1 343 77.8
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 5.2e-154 548.1 377 74.8
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 6.8e-154 547.7 311 81.7
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 6.8e-154 547.7 378 75.1
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 8.8e-154 547.4 392 72.4
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.2e-153 547.0 309 84.5
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 1.5e-153 546.6 379 73.6
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 2.0e-153 546.2 379 72.0
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 4.4e-153 545.0 401 69.8
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 4.4e-153 545.0 382 71.5
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 4.4e-153 545.0 393 71.5
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 1.3e-152 543.5 379 70.4
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.3e-152 543.5 378 71.2
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.7e-152 543.1 379 71.0
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 2.8e-152 542.3 370 73.0
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 8.3e-152 540.8 383 70.5
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 1.1e-151 540.4 377 71.4
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.4e-151 539.3 382 72.5
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 5.4e-151 538.1 375 69.9
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 5.4e-151 538.1 375 69.9
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.2e-150 537.0 374 71.1
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 4.5e-150 535.0 383 70.5
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 1.0e-149 533.9 378 69.3
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 1.0e-149 533.9 378 69.3
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 1.0e-149 533.9 378 69.3
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.0e-149 533.9 382 71.5
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 1.0e-149 533.9 346 72.5
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-149 532.7 378 69.8
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 2.9e-149 532.3 377 70.8
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 6.6e-149 531.2 312 80.1
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 1.9e-148 529.6 308 81.8
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 3.3e-148 528.9 376 68.9
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 5.5e-148 528.1 296 84.1
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 1.6e-147 526.6 378 69.0
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 4.7e-147 525.0 317 77.6
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 4.7e-147 525.0 377 68.2
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 8.0e-147 524.2 381 68.5
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 5.2e-146 521.5 381 68.2
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 6.8e-146 521.2 381 68.2
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 8.9e-146 520.8 335 73.7
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 1.5e-145 520.0 379 70.7
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 5.7e-145 518.1 347 71.8
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 9.2e-143 510.8 377 69.8
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.2e-142 510.4 316 76.6
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.2e-142 510.4 314 76.1
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 1.2e-142 510.4 380 69.5
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 3.5e-142 508.8 381 67.5
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 1.0e-141 507.3 344 73.3
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 2.3e-141 506.1 308 76.0
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 2.3e-141 506.1 314 76.8
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 8.6e-141 504.2 382 66.0
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 7.3e-140 501.1 305 74.4
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 1.2e-139 500.4 352 73.9
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 6.1e-139 498.0 383 68.7
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 1.0e-138 497.3 322 72.4
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.8e-138 496.5 305 76.7
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 1.8e-138 496.5 336 71.4
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 2.3e-138 496.1 341 74.8
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 7.5e-137 491.1 325 78.2
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 1.7e-136 490.0 346 72.8
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 1.4e-135 486.9 348 73.0
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 1.1e-132 477.2 377 64.2
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 5.6e-132 474.9 375 64.0
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 7.3e-132 474.6 346 71.7
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 6.8e-130 468.0 294 73.8
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 6.6e-125 451.4 257 82.1
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 6.6e-125 451.4 257 82.1
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 9.5e-124 447.6 382 62.3
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 5.2e-122 441.8 324 69.1
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 3.7e-120 435.6 241 86.3
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.4e-119 433.7 296 64.9
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 1.3e-117 427.2 297 65.0
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 9.6e-116 421.0 289 72.0
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 1.2e-113 414.1 311 63.0
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 7.6e-113 411.4 326 68.7
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 6.4e-112 408.3 328 59.5
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 1.3e-109 400.6 261 77.4
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 6.2e-107 391.7 319 59.2
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 1.8e-106 390.2 305 62.0
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 5.8e-105 385.2 376 55.6
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 7.6e-105 384.8 234 76.1
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 8.4e-104 381.3 247 76.9
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 1.0e-93 347.8 235 77.4
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 7.4e-92 341.7 234 70.9
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.7e-91 339.3 196 83.2
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 9.0e-90 334.7 196 81.1
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 3.0e-85 319.7 219 74.0
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 1.0e-72 278.1 380 45.5
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 5.0e-72 275.8 221 67.0
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 4.2e-71 272.7 344 43.3
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 2.1e-70 270.4 219 64.4
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.5e-68 264.2 295 47.5
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 7.4e-68 261.9 309 44.3
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 1.3e-67 261.2 319 43.9
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.1e-52 211.5 152 71.7
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.2e-51 207.2 121 80.2
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 8.8e-45 185.3 330 37.0
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 3.5e-41 173.3 183 59.6
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-37 160.6 95 85.3
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 2.3e-37 160.6 132 65.9
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 5.2e-37 159.5 92 87.0
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-36 157.5 132 65.2
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 2.6e-36 157.1 94 84.0
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 5.7e-36 156.0 92 84.8
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 1.7e-35 154.5 132 63.6
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 4.3e-31 139.8 98 75.5
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 4.0e-29 133.3 75 80.0
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 4.0e-29 133.3 66 93.9
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 8.3e-27 125.6 75 76.0
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.7e-25 120.6 63 84.1
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 3.9e-24 116.7 134 51.5
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.5e-23 114.8 92 69.6
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 3.3e-23 113.6 310 28.1
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 1.5e-20 104.8 117 52.1
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 2.7e-17 94.0 61 72.1
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.3e-16 91.7 51 82.4
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 1.1e-15 88.6 100 56.0
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 1.2e-14 85.1 244 29.5
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 3.1e-13 80.5 47 80.9
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 4.4e-12 76.6 41 85.4
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 9.8e-12 75.5 44 75.0
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 1.9e-10 71.2 42 76.2
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 1.9e-10 71.2 42 76.2
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 3.0e-08 63.9 33 93.9
Cre01.g008891 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D031137 8.1e-06 55.8 58 41.4


User provided reference genes

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