Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 0.0e+00 1077.4 542 100.0
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 3.3e-303 1044.3 547 97.3
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 3.0e-280 968.0 542 90.6
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 4.8e-270 934.1 542 86.9
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 1.1e-250 869.8 541 81.7
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 1.3e-195 686.8 542 68.5
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 6.3e-185 651.4 552 61.1
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 1.2e-183 647.1 565 60.4
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 8.5e-182 641.0 601 56.4
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 1.1e-181 640.6 539 61.8
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 7.2e-181 637.9 567 58.7
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 2.7e-180 636.0 545 60.2
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 3.0e-179 632.5 638 54.4
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 2.2e-177 626.3 601 55.9
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 8.2e-177 624.4 371 84.9
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 1.8e-176 623.2 542 60.3
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 4.1e-176 622.1 615 55.1
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 2.9e-174 615.9 569 58.2
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 5.0e-174 615.1 561 57.2
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 1.1e-173 614.0 561 58.1
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 1.4e-173 613.6 582 55.7
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 1.9e-173 613.2 558 57.2
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 4.7e-172 608.6 560 56.8
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 7.9e-172 607.8 536 60.6
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 1.0e-171 607.4 546 59.0
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 1.0e-171 607.4 560 56.4
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 1.4e-171 607.1 574 56.8
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 2.3e-171 606.3 560 57.3
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 3.9e-171 605.5 556 56.1
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 8.8e-171 604.4 563 57.7
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 4.8e-169 598.6 566 56.7
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 4.8e-169 598.6 577 56.5
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 5.3e-168 595.1 556 57.6
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 4.5e-167 592.0 580 55.9
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 1.3e-166 590.5 564 56.9
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 1.3e-166 590.5 558 57.0
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 1.7e-166 590.1 541 57.5
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 1.7e-166 590.1 535 57.6
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 1.7e-166 590.1 557 56.9
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 9.4e-165 584.3 535 56.8
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 1.2e-164 583.9 539 57.9
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 2.7e-164 582.8 539 57.5
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 1.8e-163 580.1 567 54.9
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 2.3e-163 579.7 537 55.7
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 6.7e-163 578.2 557 55.1
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 8.8e-163 577.8 538 57.6
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 7.5e-162 574.7 541 55.5
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 9.7e-162 574.3 549 55.9
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 1.3e-161 573.9 564 55.5
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 4.8e-161 572.0 536 56.5
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 4.8e-161 572.0 538 56.7
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 4.8e-161 572.0 551 55.9
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 1.2e-159 567.4 557 54.2
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 1.7e-158 563.5 542 55.2
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 6.5e-158 561.6 537 54.2
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 6.1e-156 555.1 580 52.6
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 2.3e-155 553.1 562 54.4
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 2.6e-154 549.7 605 51.2
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 4.4e-154 548.9 607 51.2
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 4.8e-153 545.4 569 51.8
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 3.5e-151 539.3 581 50.4
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 1.4e-147 527.3 565 49.7
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 2.0e-146 523.5 566 51.4
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 1.6e-143 513.8 502 53.6
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 5.0e-142 508.8 508 53.7
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 1.9e-141 506.9 573 49.4
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 8.0e-140 501.5 508 53.5
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 3.0e-139 499.6 524 52.5
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 3.2e-136 489.6 496 52.8
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 3.5e-135 486.1 416 60.6
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 4.6e-135 485.7 523 53.0
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 5.0e-134 482.3 414 58.5
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 2.1e-132 476.9 552 50.2
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 3.7e-129 466.1 562 47.7
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 6.0e-127 458.8 496 49.8
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 1.4e-115 421.0 340 61.2
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 1.8e-115 420.6 506 47.4
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 1.3e-113 414.5 562 42.3
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 2.0e-106 390.6 443 48.5
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 3.2e-104 383.3 595 39.2
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 3.3e-101 373.2 371 56.6
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 3.6e-100 369.8 535 41.5
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 2.8e-92 343.6 284 62.0
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 9.0e-91 338.6 282 61.3
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 1.5e-90 337.8 347 54.5
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 5.8e-90 335.9 285 62.1
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 7.9e-87 325.5 425 44.7
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 5.6e-85 319.3 365 51.2
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 7.4e-77 292.4 288 55.6
Ca_03693_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 3.7e-68 263.5 218 61.5
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 2.4e-67 260.8 423 40.4
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 1.1e-59 235.3 249 53.4
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 5.7e-53 213.0 239 46.4
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 3.6e-47 193.7 211 51.7
Hund10273 Selenicereus undatus HOM05D007146 ORTHO05D008971 5.0e-41 173.3 123 65.0
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 6.5e-41 172.9 185 53.5
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 4.0e-38 163.7 191 48.7
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 4.0e-38 163.7 191 48.7
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 1.2e-34 152.1 197 44.7
Cpa.g.sc10.33 Carica papaya HOM05D007146 ORTHO05D008971 4.5e-34 150.2 100 66.0
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 5.0e-33 146.7 200 46.5
CDE03G0405 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 5.0e-33 146.7 117 53.8
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 3.6e-31 140.6 170 50.6
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 4.5e-26 123.6 146 52.1
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 2.5e-24 117.9 126 50.0
SMO246G0022 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 2.2e-12 78.2 89 52.8
Haze_08528 Corylus avellana HOM05D007146 ORTHO05D008971 3.5e-10 70.9 133 34.6
Cfa023972 Carpinus fangiana HOM05D007146 ORTHO05D008971 1.1e-06 59.3 319 22.3


User provided reference genes

Program Settings