Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 0.0e+00 1649.8 845 100.0
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 9.5e-281 970.3 855 63.4
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.1e-263 913.7 843 61.1
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.3e-232 810.4 840 56.3
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 1.8e-109 401.4 860 34.5
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 2.8e-91 340.9 845 32.7
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 1.7e-83 315.1 397 44.6
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 1.4e-82 312.0 312 52.2
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 3.5e-81 307.4 370 46.8
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 4.5e-81 307.0 368 46.5
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 5.9e-81 306.6 313 53.7
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 1.0e-80 305.8 343 48.7
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.7e-80 305.1 310 52.3
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 5.0e-80 303.5 408 43.6
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 5.0e-80 303.5 385 46.8
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 5.5e-79 300.1 427 41.9
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 8.0e-78 296.2 301 54.2
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 3.0e-77 294.3 393 44.8
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 2.0e-76 291.6 309 50.2
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 2.0e-76 291.6 822 31.5
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 4.1e-74 283.9 386 44.3
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 7.0e-74 283.1 366 42.9
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.2e-73 282.3 304 51.3
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 2.2e-72 278.1 302 49.7
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 2.9e-72 277.7 344 44.2
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 2.9e-72 277.7 838 29.4
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 8.5e-72 276.2 763 31.8
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 8.5e-72 276.2 375 43.5
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 3.2e-71 274.2 874 28.5
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.7e-70 271.2 862 28.7
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 2.7e-70 271.2 387 40.6
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 3.6e-70 270.8 360 44.4
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 1.4e-69 268.9 472 36.9
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 2.3e-69 268.1 316 47.5
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 2.3e-69 268.1 368 42.9
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 3.0e-69 267.7 311 47.6
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 3.0e-69 267.7 309 45.0
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 5.2e-69 266.9 321 45.2
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 8.8e-69 266.2 847 29.4
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 8.8e-69 266.2 376 44.4
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 1.2e-68 265.8 343 44.3
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 2.0e-68 265.0 335 43.9
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 2.0e-68 265.0 482 37.3
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 2.0e-68 265.0 375 41.9
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 5.7e-68 263.5 857 29.5
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 5.7e-68 263.5 339 44.2
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 9.8e-68 262.7 272 51.8
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 1.7e-67 261.9 364 41.2
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 1.7e-67 261.9 320 43.1
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 4.9e-67 260.4 364 41.2
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.3e-67 260.0 349 43.8
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 6.3e-67 260.0 305 47.2
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 8.3e-67 259.6 360 41.9
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 8.3e-67 259.6 472 37.9
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 8.3e-67 259.6 313 46.0
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 8.3e-67 259.6 316 46.5
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.1e-66 259.2 840 28.2
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.1e-66 259.2 314 47.1
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-66 259.2 309 46.6
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 3.1e-66 257.7 356 45.2
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 3.1e-66 257.7 342 43.3
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 4.1e-66 257.3 331 45.3
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 9.1e-66 256.1 342 44.2
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.0e-65 255.0 303 47.5
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 4.5e-65 253.8 363 42.7
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 7.7e-65 253.1 461 37.3
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 1.0e-64 252.7 760 29.3
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 1.7e-64 251.9 345 41.2
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.0e-64 250.4 321 44.5
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 8.6e-64 249.6 401 39.4
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 1.1e-63 249.2 308 44.8
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 5.5e-63 246.9 368 41.8
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 6.1e-62 243.4 306 44.4
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.4e-61 242.3 854 27.8
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.4e-61 242.3 317 46.1
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.4e-61 242.3 330 41.5
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.3e-61 241.5 356 41.9
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.3e-61 241.5 750 29.5
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 3.0e-61 241.1 345 39.1
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 4.0e-61 240.7 328 43.9
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.5e-60 238.8 414 38.9
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 6.3e-59 233.4 307 45.9
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.4e-58 232.3 307 45.3
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 1.8e-58 231.9 348 39.7
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.8e-58 231.9 293 45.1
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 1.8e-58 231.9 348 41.1
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 2.4e-58 231.5 303 41.9
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 2.4e-58 231.5 366 38.3
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 3.2e-58 231.1 374 40.1
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 4.1e-58 230.7 297 45.1
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 9.2e-58 229.6 297 43.4
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 2.0e-57 228.4 297 43.8
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 5.9e-57 226.9 323 40.9
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 2.3e-56 224.9 297 43.1
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 2.3e-56 224.9 371 37.7
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 5.0e-56 223.8 301 41.2
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 6.6e-56 223.4 330 40.0
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 6.6e-56 223.4 266 47.0
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.9e-55 221.9 305 45.6
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 3.3e-55 221.1 342 39.5
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 4.3e-55 220.7 335 40.3
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.6e-55 220.3 260 46.5
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 9.5e-55 219.5 521 31.1
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 9.5e-55 219.5 332 39.5
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 1.6e-54 218.8 742 28.3
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 2.3e-53 214.9 265 45.7
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.1e-53 214.5 267 46.1
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.2e-52 212.6 280 44.6
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.5e-52 212.2 269 43.5
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 5.8e-52 210.3 378 38.1
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 9.8e-52 209.5 354 35.9
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.4e-50 205.7 561 31.6
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 3.5e-49 201.1 274 42.0
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.0e-48 199.5 297 39.4
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.1e-47 196.1 309 39.8
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 7.3e-47 193.4 218 46.8
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.4e-42 179.1 216 44.9
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 3.3e-39 167.9 224 43.3
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 4.3e-39 167.5 391 32.5
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 3.2e-34 151.4 855 24.2
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 2.1e-33 148.7 267 37.8
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 3.6e-30 137.9 183 44.3
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 8.9e-29 133.3 186 41.9
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 8.9e-29 133.3 186 41.9
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 8.1e-22 110.2 99 53.5
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 1.4e-21 109.4 240 32.9
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 4.0e-21 107.8 228 32.5
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 5.3e-21 107.5 121 43.8
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 7.6e-20 103.6 153 37.3
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.1e-18 99.8 148 41.2
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.1e-18 99.8 217 33.2
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 1.3e-14 86.3 189 32.8
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 3.8e-11 74.7 143 36.4
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 4.6e-09 67.8 113 34.5
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 1.1e-07 63.2 239 24.3
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 1.1e-07 63.2 295 22.4
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.9e-07 62.4 88 37.5
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 4.3e-07 61.2 165 26.1
CAN.G285.8 Capsicum annuum HOM05D004076 ORTHO05D004606 1.3e-06 59.7 46 67.4


User provided reference genes

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