Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g034140 Solanum pennellii HOM05D007771 ORTHO05D009850 2.1e-38 161.8 77 100.0
PGSC0003DMG400022153 Solanum tuberosum HOM05D007771 ORTHO05D009850 2.4e-34 148.3 77 90.9
Solyc07g065940.1 Solanum lycopersicum HOM05D007771 ORTHO05D009850 1.6e-33 145.6 71 98.6
CAN.G623.52 Capsicum annuum HOM05D007771 ORTHO05D009850 7.2e-18 93.6 73 64.4
Eucgr.F03660 Eucalyptus grandis HOM05D007771 ORTHO05D009850 9.3e-18 93.2 67 65.7
arahy.Tifrunner.gnm1.ann1.YJMT2M Arachis hypogaea HOM05D007771 ORTHO05D009850 1.2e-17 92.8 67 61.2
Potri.001G469401 Populus trichocarpa HOM05D007771 ORTHO05D009850 2.7e-17 91.7 73 63.0
arahy.Tifrunner.gnm1.ann1.0J0D7Z Arachis hypogaea HOM05D007771 ORTHO05D009850 3.6e-17 91.3 67 62.7
arahy.Tifrunner.gnm1.ann1.29L1CF Arachis hypogaea HOM05D007771 ORTHO05D009850 3.6e-17 91.3 67 62.7
Cfa016941 Carpinus fangiana HOM05D007771 ORTHO05D009850 6.1e-17 90.5 68 67.6
QL08p001590 Quercus lobata HOM05D007771 ORTHO05D009850 7.9e-17 90.1 74 62.2
Phvul.008G282400 Phaseolus vulgaris HOM05D007771 ORTHO05D009850 3.0e-16 88.2 67 61.2
Gohir.D05G386700 Gossypium hirsutum HOM05D007771 ORTHO05D009850 3.9e-16 87.8 67 68.7
MD03G1039700 Malus domestica HOM05D007771 ORTHO05D009850 3.9e-16 87.8 67 59.7
Glyma.02G303200 Glycine max HOM05D007771 ORTHO05D009850 6.7e-16 87.0 67 58.2
Thecc.07G005300 Theobroma cacao HOM05D007771 ORTHO05D009850 6.7e-16 87.0 67 64.2
Manes.02G224000 Manihot esculenta HOM05D007771 ORTHO05D009850 1.1e-15 86.3 64 65.6
Cc05_g15490 Coffea canephora HOM05D007771 ORTHO05D009850 1.5e-15 85.9 67 59.7
TWI39G0067 Tripterygium wilfordii HOM05D007771 ORTHO05D009850 1.5e-15 85.9 67 62.7
MD11G1040400 Malus domestica HOM05D007771 ORTHO05D009850 1.9e-15 85.5 70 60.0
CiPaw.11G208800 Carya illinoinensis HOM05D007771 ORTHO05D009850 3.3e-15 84.7 67 61.2
LjContig00081g0001678 Lotus japonicus HOM05D007771 ORTHO05D009850 4.3e-15 84.3 67 59.7
Manes.05G206300 Manihot esculenta HOM05D007771 ORTHO05D009850 5.7e-15 84.0 75 58.7
Potri.005G061200 Populus trichocarpa HOM05D007771 ORTHO05D009850 9.7e-15 83.2 67 50.7
TPR.G1243 Trifolium pratense HOM05D007771 ORTHO05D009850 9.7e-15 83.2 67 56.7
Glyma.14G010700 Glycine max HOM05D007771 ORTHO05D009850 1.6e-14 82.4 67 55.2
Atru.chr2.3846 Acer truncatum HOM05D007771 ORTHO05D009850 2.2e-14 82.0 74 58.1
TAR627G1191 Trochodendron aralioides HOM05D007771 ORTHO05D009850 2.8e-14 81.6 67 61.2
Potri.011G166250 Populus trichocarpa HOM05D007771 ORTHO05D009850 4.8e-14 80.9 77 55.8
Medtr5g096780 Medicago truncatula HOM05D007771 ORTHO05D009850 6.3e-14 80.5 67 56.7
Medtr5g096760 Medicago truncatula HOM05D007771 ORTHO05D009850 8.2e-14 80.1 67 55.2
Ciclev10010110m.g Citrus clementina HOM05D007771 ORTHO05D009850 1.1e-13 79.7 68 54.4
Duzib268G1197 Durio zibethinus HOM05D007771 ORTHO05D009850 1.1e-13 79.7 67 58.2
Potri.007G107500 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.1e-13 79.7 75 52.0
Lalb_Chr17g0349031 Lupinus albus HOM05D007771 ORTHO05D009850 1.4e-13 79.3 67 55.2
BcaC01g01562 Brassica carinata HOM05D007771 ORTHO05D009850 2.4e-13 78.6 69 60.9
A08p00340 Brassica napus HOM05D007771 ORTHO05D009850 2.4e-13 78.6 69 60.9
C03p93160 Brassica napus HOM05D007771 ORTHO05D009850 2.4e-13 78.6 69 60.9
BolC3t21615H Brassica oleracea HOM05D007771 ORTHO05D009850 2.4e-13 78.6 69 60.9
BcaB04g16929 Brassica carinata HOM05D007771 ORTHO05D009850 3.1e-13 78.2 69 60.9
BraA08t32092Z Brassica rapa HOM05D007771 ORTHO05D009850 3.1e-13 78.2 69 60.9
Gohir.A04G003000 Gossypium hirsutum HOM05D007771 ORTHO05D009850 4.1e-13 77.8 59 67.8
Gorai.009G453400 Gossypium raimondii HOM05D007771 ORTHO05D009850 4.1e-13 77.8 59 67.8
RcHm_v2.0_Chr5g0075191 Rosa chinensis HOM05D007771 ORTHO05D009850 9.1e-13 76.6 67 58.2
MELO3C014083.2 Cucumis melo HOM05D007771 ORTHO05D009850 1.2e-12 76.3 67 55.2
MBI15_g00878_MAGBIO Magnolia biondii HOM05D007771 ORTHO05D009850 2.0e-12 75.5 68 52.9
PGR083G2136 Punica granatum HOM05D007771 ORTHO05D009850 2.0e-12 75.5 67 59.7
BraA05t22434Z Brassica rapa HOM05D007771 ORTHO05D009850 4.5e-12 74.3 68 57.4
Sed0026400 Sechium edule HOM05D007771 ORTHO05D009850 5.9e-12 73.9 67 50.7
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 1.0e-11 73.2 68 54.4
Carub.0003s1266 Capsella rubella HOM05D007771 ORTHO05D009850 1.0e-11 73.2 69 55.1
Nn1g08434 Nelumbo nucifera HOM05D007771 ORTHO05D009850 1.3e-11 72.8 83 50.6
BolC3t16896H Brassica oleracea HOM05D007771 ORTHO05D009850 1.7e-11 72.4 68 52.9
CANSAT11G2411 Cannabis sativa HOM05D007771 ORTHO05D009850 1.7e-11 72.4 67 52.2
COL.COLO4_07761 Corchorus olitorius HOM05D007771 ORTHO05D009850 2.9e-11 71.6 58 56.9
BcaB06g25475 Brassica carinata HOM05D007771 ORTHO05D009850 3.8e-11 71.2 68 54.4
AT3G13275 Arabidopsis thaliana HOM05D007771 ORTHO05D009850 5.0e-11 70.9 67 53.7
ClCG10G004130 Citrullus lanatus HOM05D007771 ORTHO05D009850 6.5e-11 70.5 67 52.2
Migut.H01728 Erythranthe guttata HOM05D007771 ORTHO05D009850 6.5e-11 70.5 67 50.7
C03p46260 Brassica napus HOM05D007771 ORTHO05D009850 8.5e-11 70.1 68 51.5
CARHR045420 Cardamine hirsuta HOM05D007771 ORTHO05D009850 8.5e-11 70.1 67 53.7
Thhalv10022324m.g Eutrema salsugineum HOM05D007771 ORTHO05D009850 8.5e-11 70.1 67 53.7
AL3G25100 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 1.1e-10 69.7 67 52.2
BcaC05g29197 Brassica carinata HOM05D007771 ORTHO05D009850 1.1e-10 69.7 69 56.5
C05p54690 Brassica napus HOM05D007771 ORTHO05D009850 1.1e-10 69.7 69 56.5
BolC5t34139H Brassica oleracea HOM05D007771 ORTHO05D009850 1.1e-10 69.7 69 56.5
A05p36330 Brassica napus HOM05D007771 ORTHO05D009850 1.9e-10 68.9 46 67.4
FAN11G2649 Fragaria x ananassa HOM05D007771 ORTHO05D009850 1.9e-10 68.9 40 72.5
Sp3g11480 Schrenkiella parvula HOM05D007771 ORTHO05D009850 1.9e-10 68.9 46 67.4
AL1G63820 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 3.2e-10 68.2 67 53.7
EL10Ac4g07508 Beta vulgaris HOM05D007771 ORTHO05D009850 5.5e-10 67.4 41 65.9
BolC1t05126H Brassica oleracea HOM05D007771 ORTHO05D009850 7.2e-10 67.0 68 54.4
PGSC0003DMG400014434 Solanum tuberosum HOM05D007771 ORTHO05D009850 9.4e-10 66.6 60 51.7
CARHR087900 Cardamine hirsuta HOM05D007771 ORTHO05D009850 1.2e-09 66.2 46 67.4
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 1.6e-09 65.9 74 47.3
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.6e-09 65.9 74 47.3
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 3.6e-09 64.7 46 65.2
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 1.0e-08 63.2 60 51.7
EL10Ac4g09984 Beta vulgaris HOM05D007771 ORTHO05D009850 2.3e-08 62.0 36 75.0
HanXRQChr03g0077771 Helianthus annuus HOM05D007771 ORTHO05D009850 1.1e-07 59.7 67 46.3
Carub.0001s4425 Capsella rubella HOM05D007771 ORTHO05D009850 3.3e-07 58.2 47 59.6
HanXRQChr13g0409141 Helianthus annuus HOM05D007771 ORTHO05D009850 3.3e-07 58.2 68 47.1
Gohir.A13G130128 Gossypium hirsutum HOM05D007771 ORTHO05D009850 4.4e-07 57.8 65 44.6
DCAR_013772 Daucus carota HOM05D007771 ORTHO05D009850 9.7e-07 56.6 41 56.1
Gohir.D13G133100 Gossypium hirsutum HOM05D007771 ORTHO05D009850 2.2e-06 55.5 65 44.6
Gorai.013G149400 Gossypium raimondii HOM05D007771 ORTHO05D009850 2.8e-06 55.1 65 43.1
Lalb_Chr04g0247701 Lupinus albus HOM05D007771 ORTHO05D009850 4.8e-06 54.3 43 55.8


User provided reference genes

Program Settings