Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 0.0e+00 3490.3 1859 100.0
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 0.0e+00 3404.4 1859 97.9
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 0.0e+00 2664.8 1931 77.6
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 0.0e+00 2261.5 1957 67.4
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 0.0e+00 2255.7 1957 67.7
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 0.0e+00 1583.9 2020 52.2
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 0.0e+00 1562.7 944 91.6
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 1.5e-169 602.1 1927 33.0
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 7.0e-159 566.6 1981 31.6
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 6.8e-138 496.9 1906 31.3
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 2.0e-137 495.4 1932 30.3
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 4.9e-136 490.7 1928 31.4
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 3.1e-122 444.9 1901 29.5
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.1e-119 436.4 1958 30.4
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 6.6e-117 427.2 1968 30.0
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 4.7e-115 421.0 2014 29.4
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 8.1e-115 420.2 2067 28.8
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 1.7e-112 412.5 843 41.0
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 4.1e-111 407.9 1966 28.9
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.2e-105 389.8 2005 28.1
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 2.4e-98 365.5 1932 28.5
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 3.2e-95 355.1 2000 27.8
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 2.5e-92 345.5 1982 28.7
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 2.2e-88 332.4 2007 27.4
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 3.3e-84 318.5 1951 29.2
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 2.9e-80 305.4 1975 28.5
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 3.5e-78 298.5 2024 27.1
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 9.6e-76 290.4 640 38.4
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.7e-75 288.5 665 39.8
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.2e-71 275.0 2000 26.8
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 4.2e-71 275.0 2008 27.0
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.7e-70 272.3 823 35.2
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 6.0e-70 271.2 2074 26.2
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 1.8e-69 269.6 2052 27.3
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.9e-69 268.5 1926 27.6
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 3.3e-68 265.4 487 47.4
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.3e-68 265.4 657 38.4
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 4.3e-68 265.0 841 36.0
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.7e-67 261.9 658 38.8
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 1.4e-66 260.0 1044 31.8
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 2.4e-66 259.2 2151 27.1
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.2e-65 256.9 667 39.7
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 1.5e-65 256.5 1984 25.9
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 2.0e-65 256.1 665 38.0
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 5.9e-65 254.6 1958 26.5
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.7e-64 253.1 2031 26.4
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 2.2e-64 252.7 623 39.8
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 5.0e-64 251.5 712 36.4
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 2.5e-63 249.2 820 35.0
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 5.5e-63 248.1 1982 26.6
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.1e-62 246.1 830 32.2
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 6.1e-62 244.6 823 33.5
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 3.0e-61 242.3 613 38.0
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.9e-61 241.9 744 36.4
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 5.1e-61 241.5 1978 26.5
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 8.7e-61 240.7 1972 26.0
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 8.7e-61 240.7 1959 25.9
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.3e-60 238.8 1956 25.9
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 3.1e-58 232.3 1948 26.6
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 3.4e-57 228.8 647 36.5
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.0e-56 227.3 632 38.6
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 2.2e-56 226.1 759 30.7
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 3.8e-56 225.3 835 33.4
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 7.2e-55 221.1 1951 25.5
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.6e-54 219.9 1965 26.0
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.0e-53 217.2 460 46.1
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 1.8e-53 216.5 1978 23.3
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.8e-53 216.5 1971 25.8
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 6.7e-53 214.5 617 31.6
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 1.1e-52 213.8 684 36.0
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 3.3e-52 212.2 633 37.0
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 3.3e-52 212.2 833 33.0
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 1.4e-50 206.8 653 37.7
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 6.9e-50 204.5 625 38.6
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.6e-49 202.6 724 36.2
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 2.9e-48 199.1 652 36.2
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 6.1e-46 191.4 712 33.4
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 2.3e-45 189.5 1918 24.0
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 1.5e-44 186.8 819 31.3
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 2.0e-44 186.4 814 31.1
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 2.0e-44 186.4 1947 25.6
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 2.6e-44 186.0 740 32.7
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 4.8e-43 181.8 1952 25.7
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 8.2e-43 181.0 669 35.6
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 3.5e-41 175.6 661 34.8
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 1.3e-40 173.7 740 33.2
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.9e-40 172.6 630 33.8
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 6.5e-40 171.4 520 41.3
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 1.1e-39 170.6 714 31.9
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.5e-39 170.2 678 28.8
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.5e-39 170.2 879 27.6
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.5e-39 170.2 1940 25.6
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 1.6e-38 166.8 672 33.8
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 4.7e-38 165.2 287 39.0
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 6.1e-38 164.9 648 33.0
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 4.0e-37 162.2 1976 25.1
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.5e-36 160.2 565 31.7
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 9.7e-36 157.5 818 27.9
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 2.2e-35 156.4 680 32.8
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 5.9e-33 148.3 658 35.1
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 1.0e-32 147.5 669 34.2
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 3.2e-31 142.5 257 55.3
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 7.2e-31 141.4 410 33.7
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 8.8e-29 134.4 850 30.9
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 7.5e-28 131.3 685 28.5
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 1.3e-27 130.6 2088 24.1
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 6.3e-27 128.3 679 33.3
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 8.3e-27 127.9 711 31.8
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 1.4e-26 127.1 934 24.4
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.5e-25 122.1 288 33.3
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 5.9e-25 121.7 453 40.6
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.9e-24 119.4 501 28.9
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 1.1e-23 117.5 720 31.8
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 4.7e-22 112.1 643 32.3
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.4e-21 110.5 74 68.9
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 6.8e-21 108.2 640 29.1
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 2.6e-20 106.3 728 31.0
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 3.7e-19 102.4 710 31.0
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.2e-17 97.4 442 29.2
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 1.2e-17 97.4 782 25.7
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 2.0e-17 96.7 705 27.9
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 4.3e-15 89.0 83 66.3
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 7.3e-15 88.2 188 37.8
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.7e-14 85.5 67 64.2
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 1.5e-12 80.5 246 31.7
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.5e-12 80.5 307 26.4
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 2.0e-12 80.1 406 28.8
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 7.5e-12 78.2 246 31.3
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 9.8e-12 77.8 108 53.7
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 9.8e-12 77.8 74 52.7
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 1.7e-11 77.0 777 24.2
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 1.7e-11 77.0 185 33.5
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 6.0e-09 68.6 247 27.9
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 7.8e-09 68.2 226 29.6
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 7.8e-09 68.2 64 48.4
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 7.8e-09 68.2 77 48.1
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.0e-08 67.8 59 67.8
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 2.3e-08 66.6 245 28.2
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 3.0e-08 66.2 449 33.4
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 1.9e-07 63.5 55 54.5
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 2.5e-07 63.2 211 32.2
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 5.6e-07 62.0 185 33.5
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 7.3e-07 61.6 61 45.9
CBR_g22984 Chara braunii HOM05D014698 ORTHO05D016532 1.2e-06 60.8 63 46.0
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 1.2e-06 60.8 73 42.5


User provided reference genes

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