Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g033490 Solanum pennellii HOM05D005994 ORTHO05D007322 1.2e-52 209.5 103 100.0
PGSC0003DMG400022186 Solanum tuberosum HOM05D005994 ORTHO05D007322 1.3e-51 206.1 103 98.1
CAN.G337.28 Capsicum annuum HOM05D005994 ORTHO05D007322 1.5e-50 202.6 103 96.1
Nitab4.5_0000461g0100 Nicotiana tabacum HOM05D005994 ORTHO05D007322 9.5e-50 199.9 103 95.1
HanXRQChr08g0213481 Helianthus annuus HOM05D005994 ORTHO05D007322 2.3e-48 195.3 99 94.9
Cc05_g14690 Coffea canephora HOM05D005994 ORTHO05D007322 3.1e-48 194.9 99 94.9
Peaxi162Scf00955g00216 Petunia axillaris HOM05D005994 ORTHO05D007322 3.1e-48 194.9 99 94.9
Solyc07g065275.1 Solanum lycopersicum HOM05D005994 ORTHO05D007322 4.0e-48 194.5 95 97.9
Oeu005968.1 Olea europaea HOM05D005994 ORTHO05D007322 5.2e-48 194.1 99 93.9
Nitab4.5_0000163g0320 Nicotiana tabacum HOM05D005994 ORTHO05D007322 8.9e-48 193.4 97 96.9
Nitab4.5_0001750g0060 Nicotiana tabacum HOM05D005994 ORTHO05D007322 8.9e-48 193.4 97 96.9
CSS0045306 Camellia sinensis var. sinensis HOM05D005994 ORTHO05D007322 1.2e-47 193.0 99 94.9
ECA246G1213 Erigeron canadensis HOM05D005994 ORTHO05D007322 1.2e-47 193.0 99 93.9
vmacro11561 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 1.2e-47 193.0 99 93.9
MSTRG.14470 Avicennia marina HOM05D005994 ORTHO05D007322 1.5e-47 192.6 99 93.9
Oeu005493.1 Olea europaea HOM05D005994 ORTHO05D007322 1.5e-47 192.6 99 93.9
Rhsim06G0226700 Rhododendron simsii HOM05D005994 ORTHO05D007322 3.4e-47 191.4 99 92.9
Sed0000308 Sechium edule HOM05D005994 ORTHO05D007322 3.4e-47 191.4 99 91.9
Actinidia05033 Actinidia chinensis HOM05D005994 ORTHO05D007322 4.4e-47 191.0 99 92.9
vmacro09668 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 4.4e-47 191.0 99 92.9
Gohir.D06G216900 Gossypium hirsutum HOM05D005994 ORTHO05D007322 5.8e-47 190.7 97 92.8
Gorai.010G249300 Gossypium raimondii HOM05D005994 ORTHO05D007322 5.8e-47 190.7 97 92.8
Gohir.A06G204600 Gossypium hirsutum HOM05D005994 ORTHO05D007322 7.5e-47 190.3 97 92.8
unitig_747.g21642 Utricularia gibba HOM05D005994 ORTHO05D007322 7.5e-47 190.3 101 91.1
ClCG01G010630 Citrullus lanatus HOM05D005994 ORTHO05D007322 9.8e-47 189.9 99 91.9
MSTRG.13010 Avicennia marina HOM05D005994 ORTHO05D007322 1.3e-46 189.5 99 90.9
SGA_v2.0_scaffold168G38531 Striga asiatica HOM05D005994 ORTHO05D007322 1.3e-46 189.5 99 91.9
Lsat_1_v5_gn_5_8041 Lactuca sativa HOM05D000063 ORTHO05D000906 1.7e-46 189.1 98 91.8
Thecc.06G236600 Theobroma cacao HOM05D005994 ORTHO05D007322 1.7e-46 189.1 97 91.8
MELO3C025540.2 Cucumis melo HOM05D005994 ORTHO05D007322 2.2e-46 188.7 99 90.9
Duzib235G0800 Durio zibethinus HOM05D005994 ORTHO05D007322 2.2e-46 188.7 97 91.8
Actinidia00094 Actinidia chinensis HOM05D005994 ORTHO05D007322 2.9e-46 188.3 99 90.9
COL.COLO4_07784 Corchorus olitorius HOM05D005994 ORTHO05D007322 2.9e-46 188.3 96 92.7
DCAR_013214 Daucus carota HOM05D005994 ORTHO05D007322 3.7e-46 188.0 99 88.9
Aqoxy4G02214 Aquilegia oxysepala HOM05D005994 ORTHO05D007322 4.9e-46 187.6 99 91.9
Sed0000190 Sechium edule HOM05D005994 ORTHO05D007322 4.9e-46 187.6 99 89.9
Manes.09G081660 Manihot esculenta HOM05D005994 ORTHO05D007322 6.4e-46 187.2 97 92.8
Os08g0431500 Oryza sativa ssp. japonica HOM05D005994 ORTHO05D007322 6.4e-46 187.2 103 85.4
PGR004G2260 Punica granatum HOM05D005994 ORTHO05D007322 6.4e-46 187.2 99 91.9
Duzib192G0253 Durio zibethinus HOM05D005994 ORTHO05D007322 8.3e-46 186.8 96 92.7
PSO063G2191 Papaver somniferum HOM05D005994 ORTHO05D007322 8.3e-46 186.8 104 87.5
Ah.06g181210 Amaranthus hybridus HOM05D005994 ORTHO05D007322 1.4e-45 186.0 102 87.3
arahy.Tifrunner.gnm1.ann1.CR688Y Arachis hypogaea HOM05D005994 ORTHO05D007322 1.4e-45 186.0 101 88.1
arahy.Tifrunner.gnm1.ann1.R43TP7 Arachis hypogaea HOM05D005994 ORTHO05D007322 1.4e-45 186.0 101 88.1
Glyma.09G011900 Glycine max HOM05D005994 ORTHO05D007322 1.4e-45 186.0 101 88.1
Glyma.15G116500 Glycine max HOM05D005994 ORTHO05D007322 1.4e-45 186.0 101 88.1
Phvul.006G141600 Phaseolus vulgaris HOM05D005994 ORTHO05D007322 1.4e-45 186.0 101 87.1
TPR.G10599 Trifolium pratense HOM05D005994 ORTHO05D007322 1.9e-45 185.7 101 88.1
Migut.M01676 Erythranthe guttata HOM05D005994 ORTHO05D007322 2.4e-45 185.3 99 88.9
Lj6g0002817 Lotus japonicus HOM05D005994 ORTHO05D007322 2.4e-45 185.3 101 88.1
TWI63G1647 Tripterygium wilfordii HOM05D005994 ORTHO05D007322 3.2e-45 184.9 97 90.7
Potri.006G016300 Populus trichocarpa HOM05D005994 ORTHO05D007322 4.1e-45 184.5 97 90.7
ATR0564G257 Amborella trichopoda HOM05D005994 ORTHO05D007322 5.4e-45 184.1 99 88.9
Lalb_Chr03g0035721 Lupinus albus HOM05D005994 ORTHO05D007322 5.4e-45 184.1 99 88.9
PSO832G1566 Papaver somniferum HOM05D005994 ORTHO05D007322 7.0e-45 183.7 104 86.5
Sabra06G0011700 Salix brachista HOM05D005994 ORTHO05D007322 7.0e-45 183.7 102 85.3
VMungo0540G2179 Vigna mungo HOM05D005994 ORTHO05D007322 7.0e-45 183.7 101 86.1
CsaV3_1G017030 Cucumis sativus L. HOM05D005994 ORTHO05D007322 1.2e-44 183.0 94 91.5
CsaV3_UNG053450 Cucumis sativus L. HOM05D005994 ORTHO05D007322 1.2e-44 183.0 94 91.5
Sc03g0008000 Simmondsia chinensis HOM05D005994 ORTHO05D007322 1.2e-44 183.0 97 89.7
CANSAT56G3985 Cannabis sativa HOM05D005994 ORTHO05D007322 1.6e-44 182.6 97 88.7
CiPaw.10G079600 Carya illinoinensis HOM05D005994 ORTHO05D007322 1.6e-44 182.6 95 91.6
Medtr2g026500 Medicago truncatula HOM05D005994 ORTHO05D007322 1.6e-44 182.6 101 86.1
Hund23128 Selenicereus undatus HOM05D005994 ORTHO05D007322 1.6e-44 182.6 102 85.3
A03p49850 Brassica napus HOM05D005994 ORTHO05D007322 2.0e-44 182.2 101 85.1
C07p47910 Brassica napus HOM05D005994 ORTHO05D007322 2.0e-44 182.2 101 85.1
BolC7t45314H Brassica oleracea HOM05D005994 ORTHO05D007322 2.0e-44 182.2 101 85.1
BraA03t14080Z Brassica rapa HOM05D005994 ORTHO05D007322 2.0e-44 182.2 101 85.1
CDE12G0176 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 2.0e-44 182.2 99 87.9
Haze_06972 Corylus avellana HOM05D005994 ORTHO05D007322 2.0e-44 182.2 99 85.9
EL10Ac4g07614 Beta vulgaris HOM05D005994 ORTHO05D007322 2.7e-44 181.8 102 84.3
QL05p068624 Quercus lobata HOM05D005994 ORTHO05D007322 3.5e-44 181.4 99 84.8
QL05p068978 Quercus lobata HOM05D005994 ORTHO05D007322 3.5e-44 181.4 99 84.8
CARHR222840 Cardamine hirsuta HOM05D005994 ORTHO05D007322 4.6e-44 181.0 99 86.9
Zm00001eb179550 Zea mays HOM05D005994 ORTHO05D007322 4.6e-44 181.0 102 82.4
BcaNung00192 Brassica carinata HOM05D005994 ORTHO05D007322 6.0e-44 180.6 96 88.5
A01p21090 Brassica napus HOM05D005994 ORTHO05D007322 6.0e-44 180.6 96 88.5
C01p26360 Brassica napus HOM05D005994 ORTHO05D007322 6.0e-44 180.6 96 88.5
Eucgr.D00619 Eucalyptus grandis HOM05D005994 ORTHO05D007322 6.0e-44 180.6 99 85.9
Lalb_Chr19g0129971 Lupinus albus HOM05D005994 ORTHO05D007322 6.0e-44 180.6 99 85.9
Prupe.4G007400 Prunus persica HOM05D005994 ORTHO05D007322 6.0e-44 180.6 99 86.9
Sp7g15010 Schrenkiella parvula HOM05D005994 ORTHO05D007322 6.0e-44 180.6 96 88.5
AUR62017059 Chenopodium quinoa HOM05D005994 ORTHO05D007322 7.8e-44 180.3 102 83.3
Thhalv10026636m.g Eutrema salsugineum HOM05D005994 ORTHO05D007322 1.7e-43 179.1 96 87.5
FAN25G0933 Fragaria x ananassa HOM05D005994 ORTHO05D007322 1.7e-43 179.1 99 84.8
RcHm_v2.0_Chr5g0000881 Rosa chinensis HOM05D005994 ORTHO05D007322 1.7e-43 179.1 99 84.8
THA.LOC104810390 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 1.7e-43 179.1 99 85.9
AL7G38530 Arabidopsis lyrata HOM05D005994 ORTHO05D007322 2.3e-43 178.7 96 88.5
BcaC09g50351 Brassica carinata HOM05D005994 ORTHO05D007322 2.3e-43 178.7 96 87.5
BolC1t02582H Brassica oleracea HOM05D005994 ORTHO05D007322 2.3e-43 178.7 96 87.5
Carub.0007s2505 Capsella rubella HOM05D005994 ORTHO05D007322 2.3e-43 178.7 96 88.5
MD00G1058600 Malus domestica HOM05D005994 ORTHO05D007322 2.3e-43 178.7 99 85.9
MD10G1336200 Malus domestica HOM05D005994 ORTHO05D007322 2.3e-43 178.7 99 85.9
Ah.04g166430 Amaranthus hybridus HOM05D000063 ORTHO05D000906 3.0e-43 178.3 94 89.4
BcaC06g33480 Brassica carinata HOM05D005994 ORTHO05D007322 3.0e-43 178.3 96 87.5
GSVIVG01037779001 Vitis vinifera HOM05D005994 ORTHO05D007322 3.0e-43 178.3 99 85.9
Psat1g178480 Pisum sativum HOM05D005994 ORTHO05D007322 5.0e-43 177.6 95 87.4
Aa31LG2G12530 Aethionema arabicum HOM05D005994 ORTHO05D007322 6.6e-43 177.2 96 87.5
Cfa000074 Carpinus fangiana HOM05D005994 ORTHO05D007322 6.6e-43 177.2 99 83.8
FAN21G1761 Fragaria x ananassa HOM05D005994 ORTHO05D007322 6.6e-43 177.2 99 83.8
AUR62040659 Chenopodium quinoa HOM05D005994 ORTHO05D007322 8.6e-43 176.8 102 82.4
Ca_00743_v3 Cicer arietinum L. HOM05D005994 ORTHO05D007322 8.6e-43 176.8 101 82.2
Sabra16G0013400 Salix brachista HOM05D005994 ORTHO05D007322 8.6e-43 176.8 95 88.4
MBI04_g07210_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 1.1e-42 176.4 97 87.6
Potri.016G009600 Populus trichocarpa HOM05D005994 ORTHO05D007322 1.1e-42 176.4 97 87.6
AT4G16450 Arabidopsis thaliana HOM05D005994 ORTHO05D007322 1.9e-42 175.6 96 87.5
CDE01G0018 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 1.9e-42 175.6 99 85.9
FvH4_3g00660 Fragaria vesca HOM05D005994 ORTHO05D007322 3.3e-42 174.9 94 86.2
HPP92_013264 Vanilla planifolia HOM05D005994 ORTHO05D007322 3.3e-42 174.9 94 88.3
THA.LOC104815483 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 2.1e-41 172.2 98 85.7
Peaxi162Scf00285g00824 Petunia axillaris HOM05D005994 ORTHO05D007322 3.6e-41 171.4 100 86.0
Ciclev10016738m.g Citrus clementina HOM05D005994 ORTHO05D007322 4.0e-40 167.9 121 70.2
Atru.chr1.2350 Acer truncatum HOM05D005994 ORTHO05D007322 1.2e-31 139.8 97 73.2
MBI04_g36325_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 1.5e-31 139.4 99 73.7
SEGI_25373 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 1.7e-30 136.0 78 82.1
Mapoly0008s0024 Marchantia polymorpha HOM05D005994 ORTHO05D007322 4.3e-26 121.3 90 66.7
Pp3c6_28950 Physcomitrium patens HOM05D005994 ORTHO05D007322 3.1e-24 115.2 88 61.4
SEGI_29999 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 6.8e-24 114.0 90 61.1
CBR_g41406 Chara braunii HOM05D005994 ORTHO05D007322 1.3e-22 109.8 91 58.2
AagrBONN_evm.TU.Sc2ySwM_368.698 Anthoceros agrestis HOM05D005994 ORTHO05D007322 1.7e-22 109.4 85 61.2
AagrBONN_evm.TU.Sc2ySwM_117.3129 Anthoceros agrestis HOM05D005994 ORTHO05D007322 7.1e-21 104.0 90 56.7
Medtr2g097750 Medicago truncatula HOM05D005994 ORTHO05D007322 3.5e-20 101.7 59 83.1
MCO11G626 Micromonas commoda HOM05D005994 ORTHO05D007322 7.8e-20 100.5 90 56.7
Nn5g27130 Nelumbo nucifera HOM05D005994 ORTHO05D007322 2.3e-19 99.0 52 90.4
TAR626G0394 Trochodendron aralioides HOM05D005994 ORTHO05D007322 3.0e-19 98.6 51 92.2
Cpa.g.sc3096.1 Carica papaya HOM05D005994 ORTHO05D007322 7.3e-18 94.0 56 76.8
Dinv10313 Davidia involucrata HOM05D005994 ORTHO05D007322 2.8e-17 92.0 94 57.4
Nitab4.5_0005540g0030 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.8e-16 89.4 52 84.6
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 4.0e-16 88.2 51 82.4
HanXRQChr17g0564261 Helianthus annuus HOM05D005994 ORTHO05D007322 2.0e-15 85.9 96 54.2
SMO223G0003 Selaginella moellendorffii HOM05D005994 ORTHO05D007322 4.4e-15 84.7 87 48.3
Zm00001eb041720 Zea mays HOM05D005994 ORTHO05D007322 9.3e-13 77.0 55 65.5
TAR627G0003 Trochodendron aralioides HOM05D005994 ORTHO05D007322 1.1e-10 70.1 43 79.1


User provided reference genes

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