Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 7.1e-178 627.1 303 100.0
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 2.5e-175 618.6 303 98.7
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 6.6e-168 594.0 308 93.2
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 2.9e-147 525.4 296 85.1
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 8.4e-147 523.9 296 85.5
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 6.0e-145 517.7 295 85.1
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 4.4e-119 431.8 305 68.2
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 7.7e-116 421.0 288 71.2
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 2.9e-115 419.1 286 71.0
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 1.9e-114 416.4 292 70.5
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 5.5e-114 414.8 290 71.0
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 4.0e-112 408.7 290 70.0
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 8.8e-112 407.5 297 68.0
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 1.2e-111 407.1 295 67.8
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 1.5e-111 406.8 302 65.9
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 2.0e-111 406.4 296 73.3
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 7.5e-111 404.4 236 80.1
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 9.7e-111 404.1 290 69.3
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.3e-110 403.7 286 67.1
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 2.2e-110 402.9 289 69.6
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 6.3e-110 401.4 289 68.9
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 6.3e-110 401.4 294 68.4
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 1.4e-109 400.2 273 68.9
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 2.4e-109 399.4 297 65.3
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 4.1e-109 398.7 254 76.4
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 4.1e-109 398.7 261 71.3
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 5.3e-109 398.3 286 66.1
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 7.0e-109 397.9 304 66.1
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 9.1e-109 397.5 286 65.7
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 9.1e-109 397.5 241 78.0
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 1.6e-108 396.7 287 67.9
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 2.0e-108 396.4 231 78.4
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 1.0e-107 394.0 243 76.1
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 2.9e-107 392.5 297 65.0
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 3.8e-107 392.1 288 67.7
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 3.8e-107 392.1 245 75.9
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 5.0e-107 391.7 276 68.8
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 1.5e-106 390.2 293 65.2
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 1.5e-106 390.2 292 64.7
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 4.2e-106 388.7 263 70.7
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.2e-105 387.1 311 61.7
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 2.7e-105 386.0 286 67.5
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 2.7e-105 386.0 244 73.4
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 4.7e-105 385.2 262 70.6
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 4.7e-105 385.2 322 60.9
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 8.0e-105 384.4 288 69.4
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 1.8e-104 383.3 300 62.3
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 2.3e-104 382.9 288 65.6
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 2.3e-104 382.9 231 74.9
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 6.8e-104 381.3 248 73.0
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 5.7e-103 378.3 270 68.5
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 5.7e-103 378.3 248 73.0
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 7.5e-103 377.9 284 63.7
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 1.3e-102 377.1 295 61.7
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 6.3e-102 374.8 230 75.7
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 2.4e-101 372.9 277 65.0
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 7.7e-100 367.9 215 80.0
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 2.9e-99 365.9 255 67.8
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 5.0e-99 365.2 294 61.9
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 1.5e-98 363.6 227 78.0
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 5.5e-98 361.7 318 57.9
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 5.5e-98 361.7 232 72.0
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 9.5e-98 360.9 231 73.6
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 1.2e-97 360.5 215 77.7
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 2.1e-97 359.8 218 75.2
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 2.8e-97 359.4 239 70.7
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 2.8e-97 359.4 229 72.5
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 1.4e-96 357.1 242 69.0
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.8e-96 356.7 221 76.5
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 1.2e-95 354.0 248 68.5
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.2e-95 354.0 221 71.9
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 1.5e-95 353.6 255 67.1
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 2.6e-95 352.8 232 70.7
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 3.4e-95 352.4 263 65.0
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 2.2e-94 349.7 243 68.3
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 2.8e-94 349.4 255 65.9
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 5.4e-93 345.1 217 71.4
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 2.0e-92 343.2 246 65.9
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 2.0e-92 343.2 246 65.9
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 2.0e-92 343.2 246 65.9
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 7.8e-92 341.3 257 64.2
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 1.0e-91 340.9 255 63.5
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 4.3e-90 335.5 237 63.3
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 1.2e-89 334.0 286 60.1
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 3.0e-88 329.3 217 67.7
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 3.4e-87 325.9 306 57.5
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 3.4e-87 325.9 203 73.4
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 2.2e-86 323.2 296 58.8
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 8.6e-83 311.2 225 63.6
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 1.9e-82 310.1 262 60.7
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 1.2e-81 307.4 173 83.8
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 8.0e-81 304.7 186 75.3
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 3.1e-80 302.8 228 65.8
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 5.2e-80 302.0 287 56.8
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 8.9e-80 301.2 187 75.4
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 2.6e-79 299.7 209 68.9
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 3.4e-79 299.3 267 58.4
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 1.1e-77 294.3 200 70.0
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 2.4e-77 293.1 244 60.7
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 5.4e-77 292.0 219 60.7
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 1.1e-64 251.1 164 74.4
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 2.1e-60 236.9 176 67.0
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 2.4e-53 213.4 221 45.7
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.7e-51 207.2 224 49.1
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 2.3e-51 206.8 219 45.2
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 3.0e-51 206.5 150 66.7
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 7.3e-50 201.8 225 44.4
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 9.6e-50 201.4 129 74.4
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 1.6e-49 200.7 217 48.8
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.8e-49 199.9 129 73.6
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 4.8e-49 199.1 178 58.4
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 3.0e-43 179.9 220 42.3
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 1.8e-40 170.6 103 78.6
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 2.4e-37 160.2 97 78.4
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 2.4e-37 160.2 97 78.4
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 6.0e-36 155.6 106 67.9
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 9.3e-29 131.7 106 63.2
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 1.9e-26 124.0 155 47.1
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 1.9e-26 124.0 155 47.1
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 6.3e-25 119.0 79 69.6
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 4.5e-23 112.8 176 41.5
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 4.2e-21 106.3 94 54.3
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.4e-19 101.3 74 68.9
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.1e-16 91.7 50 86.0
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 4.1e-16 89.7 123 46.3
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 1.3e-14 84.7 92 51.1
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 3.2e-13 80.1 115 44.3
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 7.2e-13 79.0 105 46.7
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 7.9e-12 75.5 122 39.3
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 5.7e-10 69.3 48 64.6
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 3.1e-08 63.5 38 81.6
A04p28420 Brassica napus HOM05D000450 ORTHO05D000327 6.5e-06 55.8 217 26.7
Sabra06G0100300 Salix brachista HOM05D000450 ORTHO05D000327 6.5e-06 55.8 190 27.4
Os10g0479500 Oryza sativa ssp. japonica HOM05D000450 ORTHO05D000327 8.5e-06 55.5 199 26.6


User provided reference genes

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