Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 0.0e+00 1085.5 525 100.0
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 9.3e-311 1069.3 525 98.5
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 3.6e-302 1040.8 525 95.8
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 6.1e-270 933.7 527 86.0
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.6e-265 919.1 530 85.5
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.7e-265 918.3 527 83.5
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 4.2e-263 911.0 526 83.3
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.3e-240 836.3 526 75.5
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 6.8e-229 797.3 525 73.1
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.7e-227 792.7 549 70.7
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.7e-227 792.7 549 70.7
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.1e-222 775.8 532 69.7
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.1e-221 771.9 526 70.9
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.1e-221 771.9 526 70.9
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.1e-221 771.9 526 70.9
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.1e-221 771.9 526 70.9
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.2e-218 761.9 526 72.1
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 7.1e-218 760.8 530 70.0
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.5e-217 758.4 526 71.1
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.0e-216 756.9 525 69.9
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.3e-216 755.7 532 69.0
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.3e-216 755.7 532 69.0
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.1e-215 753.4 526 70.2
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 6.2e-214 747.7 529 68.4
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.2e-209 733.4 527 67.6
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.7e-208 727.2 531 68.5
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.1e-207 726.9 527 67.9
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 1.9e-207 726.1 529 66.4
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.9e-207 726.1 521 67.0
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 2.5e-207 725.7 530 67.9
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 4.3e-207 724.9 529 66.7
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.6e-206 723.0 528 67.6
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.4e-205 719.9 530 66.4
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.8e-205 719.5 525 65.1
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 2.4e-205 719.2 529 67.5
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.4e-205 719.2 539 64.9
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 5.3e-205 718.0 531 67.6
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.2e-204 716.8 521 65.8
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 3.8e-203 711.8 530 66.4
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.9e-203 711.4 530 66.2
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.4e-202 709.9 530 66.2
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 3.5e-201 705.3 525 64.6
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 3.0e-200 702.2 532 65.4
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 8.7e-200 700.7 527 66.6
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.5e-199 699.9 526 66.5
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.5e-199 699.9 508 67.7
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 3.3e-199 698.7 535 63.2
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.7e-199 698.0 543 64.8
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.1e-198 696.0 525 65.0
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 4.8e-198 694.9 537 63.7
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 4.8e-198 694.9 530 65.7
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 1.1e-197 693.7 524 66.4
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.8e-197 693.0 525 65.3
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 3.1e-197 692.2 528 65.3
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.5e-196 689.9 520 65.6
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.0e-195 687.2 531 64.2
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.7e-195 686.4 505 66.3
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 2.2e-195 686.0 531 65.7
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 5.0e-195 684.9 525 64.0
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 8.4e-195 684.1 532 64.1
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 7.2e-194 681.0 532 65.6
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 9.3e-194 680.6 530 62.8
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 4.6e-193 678.3 524 62.6
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.3e-192 676.8 548 60.9
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.9e-192 675.2 519 64.5
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 3.3e-191 672.2 535 63.0
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 9.7e-191 670.6 529 63.1
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.3e-190 670.2 521 63.5
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 4.8e-190 668.3 521 63.9
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.4e-189 666.0 534 62.5
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 4.1e-189 665.2 531 63.3
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 9.0e-189 664.1 534 62.7
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.5e-188 663.3 534 62.4
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.0e-187 660.6 531 62.3
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 2.2e-187 659.4 524 62.0
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.0e-187 658.3 539 60.3
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 3.2e-186 655.6 528 60.2
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 9.4e-186 654.1 542 60.5
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.6e-185 653.3 520 62.5
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 3.6e-185 652.1 534 59.9
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 3.9e-184 648.7 560 59.1
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 3.9e-184 648.7 549 59.4
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 6.7e-184 647.9 544 58.3
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 8.8e-184 647.5 557 59.4
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.1e-183 647.1 553 59.0
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 3.3e-183 645.6 544 58.5
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 4.3e-183 645.2 547 59.8
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 5.7e-183 644.8 545 58.3
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 9.7e-183 644.0 556 58.8
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 1.1e-181 640.6 520 62.5
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.4e-181 640.2 491 63.7
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 4.1e-181 638.6 563 58.6
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 9.1e-181 637.5 547 57.8
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 2.7e-177 625.9 529 61.1
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 1.8e-176 623.2 541 57.9
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 3.9e-176 622.1 537 58.5
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.5e-175 620.2 527 58.1
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 9.7e-175 617.5 467 62.3
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 8.2e-174 614.4 540 56.9
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.4e-173 613.6 544 56.2
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.4e-173 612.8 522 58.4
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.0e-172 609.8 510 57.6
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.2e-171 606.3 527 57.1
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 7.2e-170 601.3 404 68.6
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.7e-169 599.4 509 59.9
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 6.1e-169 598.2 526 57.2
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.1e-167 594.0 477 60.2
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.0e-163 580.9 446 65.5
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 2.1e-161 573.2 393 68.4
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.2e-159 567.4 453 59.8
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.0e-151 540.0 383 66.1
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 5.4e-149 531.9 311 78.8
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.6e-148 530.4 479 55.1
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-147 526.6 424 61.3
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 2.9e-147 526.2 311 77.5
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 6.6e-139 498.4 303 76.2
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.1e-138 497.7 291 78.0
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.5e-138 496.5 311 73.0
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.9e-130 470.3 476 46.8
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 9.5e-122 441.4 382 57.1
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 5.8e-119 432.2 288 67.4
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 1.3e-115 421.0 241 82.6
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 3.9e-115 419.5 579 38.7
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 6.4e-110 402.1 529 40.8
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 2.5e-106 390.2 238 77.3
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 2.5e-106 390.2 246 75.2
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 5.5e-93 345.9 397 50.1
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 1.0e-86 325.1 198 77.3
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.9e-86 323.6 339 51.0
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.0e-83 315.1 201 72.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 4.3e-82 309.7 332 49.1
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.4e-77 294.7 222 63.1
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 9.1e-72 275.4 270 53.3
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 2.5e-69 267.3 166 75.9
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 5.3e-56 223.0 220 52.3
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 5.3e-56 223.0 220 53.2
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-51 207.6 157 66.2
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-49 199.9 418 29.7
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 5.3e-48 196.4 228 45.6
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.6e-47 194.9 129 65.1
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.6e-47 194.9 129 65.1
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 2.0e-47 194.5 124 67.7
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.5e-45 186.4 109 79.8
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 2.1e-44 184.5 162 54.9
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.7e-44 184.1 179 49.2
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 2.3e-38 164.5 276 38.4
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.8e-36 157.5 108 63.0
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 3.6e-36 157.1 165 48.5
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 4.7e-36 156.8 284 37.0
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.8e-35 154.8 298 33.6
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 2.6e-34 151.0 281 37.7
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 4.4e-34 150.2 185 44.9
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 9.2e-32 142.5 95 70.5
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.3e-30 137.9 180 43.3
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 3.6e-28 130.6 78 71.8
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 3.6e-28 130.6 78 71.8
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.0e-26 124.8 95 63.2
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 3.2e-24 117.5 85 62.4
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 2.3e-22 111.3 110 52.7
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 2.0e-18 98.2 72 68.1
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 1.7e-17 95.1 88 53.4
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-14 85.5 59 64.4
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.0e-10 71.6 167 29.3
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 5.4e-08 63.5 34 91.2


User provided reference genes

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