Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 0.0e+00 1162.5 589 100.0
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 0.0e+00 1156.4 589 99.5
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 0.0e+00 1147.9 589 98.3
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 4.0e-312 1074.3 591 92.6
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 9.5e-288 993.0 594 84.2
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 4.9e-284 980.7 591 83.2
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.3e-281 972.6 590 83.6
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 2.3e-281 971.8 573 84.5
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.5e-280 969.1 587 81.6
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 8.1e-279 963.4 598 81.9
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 1.1e-278 963.0 588 82.8
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 1.1e-278 963.0 572 84.1
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 1.4e-278 962.6 580 83.3
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 1.8e-278 962.2 588 83.8
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 4.0e-278 961.1 580 83.8
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 6.9e-278 960.3 596 81.9
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 1.5e-277 959.1 580 83.1
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 2.6e-277 958.4 579 82.9
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 5.8e-277 957.2 560 84.6
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 5.8e-277 957.2 590 82.4
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 5.8e-277 957.2 589 82.2
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 9.9e-277 956.4 562 84.3
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 1.3e-276 956.1 601 81.2
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 1.3e-276 956.1 589 82.2
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.7e-276 955.7 560 84.5
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 1.7e-276 955.7 574 83.3
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 2.9e-276 954.9 594 80.5
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 2.9e-276 954.9 547 86.1
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 3.8e-276 954.5 599 80.8
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 3.8e-276 954.5 590 81.4
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 3.8e-276 954.5 591 82.1
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 4.9e-276 954.1 589 81.8
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 4.9e-276 954.1 591 81.9
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 8.4e-276 953.4 586 81.9
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 1.1e-275 953.0 578 81.7
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 3.2e-275 951.4 595 81.5
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 4.2e-275 951.0 589 81.5
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 5.4e-275 950.7 589 80.8
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 7.1e-275 950.3 605 80.3
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 1.2e-274 949.5 615 78.5
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.2e-274 949.5 605 80.7
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.2e-274 949.5 586 81.4
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 1.6e-274 949.1 593 81.3
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 1.6e-274 949.1 589 80.8
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 1.6e-274 949.1 590 80.7
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 4.6e-274 947.6 613 80.8
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 4.6e-274 947.6 589 80.8
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 6.0e-274 947.2 579 81.5
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 6.0e-274 947.2 591 81.0
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 7.8e-274 946.8 551 84.2
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.0e-273 946.4 590 81.5
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.7e-273 945.7 586 81.1
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 1.7e-273 945.7 589 80.8
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 5.1e-273 944.1 594 80.1
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 1.5e-272 942.6 591 80.4
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 1.5e-272 942.6 591 80.5
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.5e-272 942.6 591 80.4
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 1.5e-272 942.6 549 85.1
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 3.3e-272 941.4 575 80.9
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 5.6e-272 940.6 589 80.6
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 8.1e-271 936.8 585 79.8
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 1.8e-270 935.6 582 81.1
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 2.4e-270 935.3 589 80.1
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 3.1e-270 934.9 592 79.7
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 3.1e-270 934.9 587 79.7
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 4.0e-270 934.5 585 79.5
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 5.8e-269 930.6 589 79.8
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.9e-268 928.3 598 80.1
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 3.8e-268 927.9 589 80.1
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 8.4e-268 926.8 612 78.3
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.9e-267 925.6 590 80.0
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.9e-267 925.6 591 80.2
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 3.2e-267 924.9 588 78.4
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 4.2e-267 924.5 591 79.5
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.1e-266 922.2 612 77.8
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.0e-265 919.8 587 79.0
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 5.1e-265 917.5 630 76.7
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 4.3e-264 914.4 576 82.3
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 2.8e-263 911.8 570 80.7
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 6.2e-263 910.6 582 79.2
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 1.2e-261 906.4 583 77.7
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.6e-261 905.2 620 76.1
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 7.6e-261 903.7 582 79.6
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 7.1e-259 897.1 591 77.2
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 1.2e-258 896.3 607 74.6
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.5e-256 888.6 595 76.3
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 9.6e-256 886.7 595 77.3
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 3.4e-253 878.2 581 74.9
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.2e-251 871.7 589 76.6
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 4.2e-251 871.3 575 75.3
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 9.3e-251 870.2 463 93.1
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 2.7e-250 868.6 586 76.6
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 1.1e-248 863.2 574 77.9
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 1.5e-248 862.8 655 70.4
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.9e-248 862.4 586 76.1
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 1.9e-248 862.4 558 78.9
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 3.3e-248 861.7 554 77.1
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 5.7e-248 860.9 636 71.7
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 4.6e-242 841.3 479 85.8
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 6.7e-241 837.4 522 81.8
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.1e-238 828.2 601 73.2
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.6e-237 825.5 549 76.3
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 3.2e-235 818.5 590 69.8
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 1.8e-230 802.7 571 73.2
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 4.5e-229 798.1 546 72.3
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 3.0e-225 785.4 532 72.6
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 7.4e-224 780.8 481 81.9
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 6.3e-223 777.7 591 67.2
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 2.0e-221 772.7 604 65.7
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 5.2e-217 758.1 535 76.3
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 2.2e-212 742.7 548 70.1
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.0e-209 733.8 583 66.9
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 9.8e-208 727.2 405 90.4
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 1.5e-187 660.2 592 58.4
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 2.3e-164 583.2 554 59.4
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 1.9e-163 580.1 410 73.9
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 1.9e-163 580.1 510 58.8
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 1.8e-161 573.5 341 84.5
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.9e-158 563.5 546 54.4
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 1.9e-158 563.5 356 80.9
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 7.6e-136 488.4 565 49.2
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 3.4e-128 463.0 257 88.7
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 6.3e-98 362.5 251 72.5
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 8.8e-92 342.0 188 84.0
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 4.1e-73 280.0 410 45.1
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 9.5e-70 268.9 208 65.9
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 2.1e-56 224.6 198 57.6
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.5e-46 191.8 116 81.0
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 1.6e-45 188.3 147 69.4
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 9.0e-44 182.6 153 64.7
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 6.6e-39 166.4 102 80.4
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.6e-37 161.8 118 62.7
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 6.7e-31 139.8 314 32.2
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 6.9e-28 129.8 312 34.0
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.9e-25 121.7 73 83.6
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 1.0e-18 99.4 57 80.7
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 3.8e-18 97.4 58 79.3
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.5e-14 84.7 111 48.6
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 9.7e-14 82.8 43 83.7
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 4.8e-13 80.5 126 42.1
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 2.4e-12 78.2 107 45.8
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 9.0e-12 76.3 89 56.2
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 1.2e-11 75.9 46 69.6
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 6.5e-10 70.1 42 76.2
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 4.2e-09 67.4 52 71.2
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 7.2e-09 66.6 36 75.0
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 2.3e-07 61.6 37 81.1
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 2.0e-06 58.5 112 37.5
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 7.4e-06 56.6 55 56.4


User provided reference genes

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