Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 2.6e-256 888.3 465 100.0
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 1.8e-244 849.0 465 96.6
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 6.1e-229 797.3 468 92.1
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 5.7e-187 657.9 523 70.7
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 2.8e-173 612.5 469 71.0
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 2.1e-165 586.3 421 73.9
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 4.0e-164 582.0 421 73.4
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 2.2e-98 363.6 488 47.1
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 2.8e-93 346.7 469 46.9
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 3.7e-93 346.3 486 47.5
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 1.5e-89 334.3 487 45.6
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.8e-87 327.4 482 46.9
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 1.5e-86 324.3 459 49.7
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 3.2e-81 306.6 530 41.1
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 9.4e-81 305.1 530 40.9
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 1.2e-80 304.7 455 45.9
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 2.7e-80 303.5 491 43.0
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 6.3e-77 292.4 444 45.9
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 8.3e-77 292.0 535 40.9
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 8.3e-77 292.0 504 41.1
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 1.1e-76 291.6 492 45.3
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 1.1e-76 291.6 513 41.9
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 2.0e-75 287.3 457 42.7
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 2.7e-75 287.0 492 43.1
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 7.7e-75 285.4 505 40.4
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 5.6e-73 279.3 483 41.6
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 2.8e-72 276.9 488 43.2
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 3.6e-72 276.6 484 40.9
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 6.1e-72 275.8 398 44.7
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 8.0e-72 275.4 617 36.0
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 1.4e-71 274.6 490 39.0
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 2.9e-69 266.9 572 37.8
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 4.9e-69 266.2 530 38.3
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 1.6e-67 261.2 480 41.7
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 4.6e-67 259.6 470 40.2
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 7.8e-67 258.8 472 40.5
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.7e-66 257.7 491 43.4
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 3.0e-66 256.9 531 37.5
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 1.1e-65 255.0 540 38.9
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 1.2e-64 251.5 488 41.6
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 1.6e-64 251.1 508 39.8
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 3.1e-63 246.9 505 40.4
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 8.9e-63 245.4 479 40.1
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 2.6e-62 243.8 506 38.1
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 1.3e-61 241.5 472 38.1
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 1.7e-61 241.1 485 36.7
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 2.9e-61 240.4 515 38.6
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 4.9e-61 239.6 324 46.6
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 1.4e-60 238.0 533 37.3
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 1.9e-60 237.7 527 36.1
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 4.1e-60 236.5 492 38.6
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 4.1e-60 236.5 362 42.8
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 5.4e-60 236.1 486 38.9
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.2e-59 235.0 456 39.3
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 1.2e-59 235.0 486 39.7
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 2.7e-59 233.8 484 39.0
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 4.6e-59 233.0 467 39.2
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 2.3e-58 230.7 439 38.3
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 2.3e-58 230.7 531 36.9
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 3.0e-58 230.3 411 41.8
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 1.1e-57 228.4 471 36.9
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 1.1e-57 228.4 581 34.8
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 5.6e-57 226.1 412 42.5
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 7.3e-57 225.7 487 38.4
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 1.6e-56 224.6 577 35.2
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 2.8e-56 223.8 540 35.6
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 2.8e-56 223.8 512 36.9
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 1.1e-55 221.9 451 37.7
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 1.8e-55 221.1 541 32.9
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 4.0e-55 219.9 479 39.2
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 5.2e-55 219.5 307 46.3
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 5.8e-54 216.1 582 34.7
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 7.5e-54 215.7 474 36.5
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.7e-53 214.5 527 37.2
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 2.2e-53 214.2 348 42.0
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 3.7e-53 213.4 427 37.0
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 1.4e-52 211.5 619 33.6
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 3.2e-52 210.3 323 42.4
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 9.2e-52 208.8 544 35.7
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 1.6e-51 208.0 523 35.2
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 4.6e-51 206.5 588 33.0
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 7.8e-51 205.7 483 36.0
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 2.3e-50 204.1 533 35.1
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 1.1e-49 201.8 485 35.3
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 1.5e-49 201.4 562 33.5
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 9.5e-49 198.7 512 33.6
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 3.6e-48 196.8 469 36.5
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 4.7e-48 196.4 520 33.5
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 3.4e-46 190.3 350 38.9
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 5.8e-46 189.5 512 32.8
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.7e-45 188.0 542 31.4
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 8.4e-45 185.7 360 40.0
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 1.9e-44 184.5 574 31.7
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 3.2e-44 183.7 403 36.0
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.6e-43 181.4 427 33.7
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 3.0e-42 177.2 590 31.9
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 3.0e-42 177.2 590 31.9
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 3.9e-42 176.8 590 31.7
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 3.6e-40 170.2 573 33.9
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 6.2e-40 169.5 586 30.4
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 3.1e-39 167.2 399 36.1
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 4.0e-39 166.8 382 34.3
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 7.6e-38 162.5 603 31.8
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 2.2e-37 161.0 323 38.7
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 5.1e-34 149.8 265 40.0
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.5e-33 148.3 274 40.9
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 2.5e-33 147.5 467 30.8
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 1.6e-32 144.8 468 32.1
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.1e-31 142.1 474 32.3
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 3.1e-31 140.6 422 30.3
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 4.8e-24 116.7 336 32.4
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.8e-23 114.8 189 41.3
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 6.4e-21 106.3 506 28.9
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 5.5e-20 103.2 177 44.1
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 7.1e-12 76.3 91 46.2
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 2.8e-08 64.3 88 44.3
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 6.9e-07 59.7 123 40.7


User provided reference genes

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