Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 6.7e-284 980.3 619 100.0
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 5.3e-273 944.1 619 97.3
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 3.9e-247 858.2 623 88.8
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 1.9e-222 776.2 633 76.8
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.0e-186 655.2 642 71.7
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.5e-185 652.9 658 69.6
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 5.5e-177 625.2 702 61.0
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 9.8e-150 534.6 636 63.2
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 6.8e-143 511.9 660 52.0
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 1.6e-139 500.7 648 54.3
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 1.9e-137 493.8 653 53.9
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 7.3e-137 491.9 652 51.8
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.8e-135 487.3 648 52.2
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 5.4e-132 475.7 641 49.6
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.3e-130 471.1 651 51.6
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 1.2e-128 464.5 611 55.0
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 3.7e-125 453.0 653 49.5
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 2.4e-124 450.3 642 49.7
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.2e-123 448.0 599 58.4
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.3e-122 444.5 646 50.5
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 3.9e-122 443.0 652 50.6
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 3.3e-121 439.9 673 47.7
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 5.6e-121 439.1 642 47.7
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 1.6e-120 437.6 662 45.9
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 1.8e-119 434.1 649 52.5
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 3.7e-117 426.4 531 56.3
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 4.1e-116 422.9 593 45.7
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 9.2e-116 421.8 660 48.9
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 1.2e-115 421.4 651 51.8
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 2.7e-115 420.2 649 46.7
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 4.6e-115 419.5 646 48.6
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 1.3e-114 417.9 691 46.7
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 3.9e-114 416.4 632 48.3
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 5.6e-113 412.5 664 48.3
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 4.7e-112 409.5 658 49.4
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.4e-111 407.9 520 51.5
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 3.1e-111 406.8 604 44.0
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 5.2e-111 406.0 682 43.4
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.6e-110 403.7 646 48.0
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 1.7e-109 401.0 592 47.6
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 1.4e-108 397.9 653 46.1
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 1.4e-108 397.9 668 42.2
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 1.2e-107 394.8 571 56.0
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 6.0e-107 392.5 683 44.9
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 7.8e-107 392.1 647 45.6
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 8.7e-106 388.7 679 44.9
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 1.5e-105 387.9 690 42.6
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 4.3e-105 386.3 634 43.2
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 9.6e-105 385.2 666 45.3
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 3.6e-104 383.3 684 46.2
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 8.1e-104 382.1 553 52.4
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.4e-103 381.3 666 44.6
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 1.8e-103 380.9 557 54.4
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 4.4e-102 376.3 668 46.4
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 7.6e-102 375.6 667 44.8
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 1.3e-101 374.8 597 54.4
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 1.3e-101 374.8 657 45.4
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 7.1e-100 369.0 632 44.9
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 2.1e-99 367.5 692 45.5
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 2.7e-99 367.1 580 47.4
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 1.7e-98 364.4 614 46.3
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 2.3e-98 364.0 592 53.0
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 3.0e-98 363.6 650 42.8
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 5.1e-98 362.8 582 46.4
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 1.1e-97 361.7 676 42.5
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 1.9e-97 360.9 671 42.9
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 4.3e-97 359.8 685 43.8
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 5.6e-97 359.4 648 45.1
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 4.8e-96 356.3 685 44.5
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 8.1e-96 355.5 583 53.7
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 6.9e-95 352.4 646 46.4
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 2.9e-93 347.1 622 48.9
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 6.4e-93 345.9 641 43.1
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 5.1e-90 336.3 543 50.3
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 5.6e-89 332.8 564 51.2
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 4.8e-88 329.7 598 46.5
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 8.1e-88 328.9 677 43.9
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.1e-87 327.0 629 49.0
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 2.6e-86 323.9 699 41.3
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 3.4e-86 323.6 656 47.4
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 1.1e-84 318.5 579 47.0
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 4.2e-84 316.6 445 52.8
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 7.9e-83 312.4 646 44.1
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 5.1e-82 309.7 651 44.2
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 6.7e-82 309.3 675 45.5
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 3.3e-81 307.0 639 40.4
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.3e-80 305.1 565 44.2
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 2.8e-80 303.9 535 49.3
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 4.8e-80 303.1 368 63.0
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 9.0e-79 298.9 609 45.2
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 7.6e-78 295.8 587 43.8
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 2.2e-77 294.3 593 47.9
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 2.5e-76 290.8 596 46.6
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 2.7e-75 287.3 585 44.4
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.6e-72 278.1 331 57.7
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 5.3e-71 273.1 660 37.4
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.2e-70 271.9 595 38.3
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 1.2e-70 271.9 433 46.7
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 1.1e-68 265.4 594 38.2
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 9.3e-68 262.3 591 38.6
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 9.7e-65 252.3 646 44.9
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.7e-64 251.5 433 44.1
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 1.8e-63 248.1 571 38.5
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 2.6e-62 244.2 552 42.2
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 7.7e-62 242.7 444 43.9
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 7.7e-62 242.7 308 48.4
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 3.9e-58 230.3 421 42.8
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 1.3e-56 225.3 628 38.4
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 1.7e-56 224.9 543 40.7
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 2.2e-56 224.6 539 40.8
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 1.1e-55 222.2 539 40.6
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 7.0e-55 219.5 546 40.5
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 6.7e-50 203.0 322 51.2
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 1.1e-44 185.7 254 46.5
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 1.6e-43 181.8 570 38.6
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 5.9e-38 163.3 182 48.9
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 7.5e-33 146.4 231 50.6
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 1.3e-32 145.6 649 31.7
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 2.8e-32 144.4 574 34.5
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 3.7e-32 144.1 131 61.1
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 2.9e-29 134.4 601 32.1
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 1.6e-27 128.6 170 48.2
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 2.1e-27 128.3 286 37.8
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.8e-26 123.2 106 76.4
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 5.7e-25 120.2 623 25.8
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 7.3e-20 103.2 111 51.4
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 3.6e-19 100.9 108 52.8
Nitab4.5_0005621g0100 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.3e-18 98.2 131 58.0
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.5e-17 95.5 107 53.3
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 7.5e-17 93.2 107 53.3
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 3.7e-16 90.9 173 47.4
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.1e-15 89.4 532 28.4
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 6.6e-13 80.1 568 29.6
AagrBONN_evm.TU.Sc2ySwM_228.4909 Anthoceros agrestis HOM05D005724 ORTHO05D006636 2.7e-06 58.2 71 43.7


User provided reference genes

Program Settings