Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 6.6e-85 317.4 167 100.0
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 5.6e-84 314.3 167 98.8
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.6e-78 296.2 167 92.8
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 7.6e-65 250.8 168 81.0
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.6e-59 233.0 167 74.3
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 1.8e-58 229.6 165 73.9
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.5e-57 226.5 160 76.2
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.1e-47 193.7 167 64.7
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 6.0e-46 188.0 167 62.9
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 5.7e-44 181.4 167 61.1
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 4.8e-43 178.3 168 61.9
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 4.5e-41 171.8 168 60.1
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 5.9e-41 171.4 168 60.1
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 5.0e-40 168.3 164 58.5
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 4.2e-39 165.2 167 58.7
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 7.4e-36 154.5 169 55.6
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 9.7e-36 154.1 169 55.6
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 5.3e-34 148.3 165 54.5
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 5.9e-33 144.8 167 53.9
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 5.9e-33 144.8 167 53.9
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 1.4e-31 140.2 167 53.9
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 3.2e-31 139.0 168 50.0
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 4.2e-31 138.7 167 52.1
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 4.7e-30 135.2 167 49.7
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 1.0e-29 134.0 167 51.5
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 1.4e-29 133.7 168 48.8
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 2.3e-29 132.9 167 51.5
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 2.3e-29 132.9 167 50.9
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 3.0e-29 132.5 165 50.9
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 2.0e-28 129.8 167 46.7
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 4.4e-28 128.6 168 50.0
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 5.7e-28 128.3 168 49.4
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 5.7e-28 128.3 167 47.3
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 7.4e-28 127.9 167 52.1
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 9.7e-28 127.5 167 52.1
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 1.3e-27 127.1 167 49.1
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 8.2e-27 124.4 167 49.1
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.4e-26 123.6 169 48.5
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.4e-26 123.6 171 49.1
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 1.4e-26 123.6 170 49.4
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 2.4e-26 122.9 168 50.0
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 4.1e-26 122.1 170 48.8
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 4.1e-26 122.1 171 49.1
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 5.3e-26 121.7 171 48.5
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 5.3e-26 121.7 171 48.5
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 9.1e-26 120.9 170 48.2
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 1.2e-25 120.6 169 47.3
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 2.0e-25 119.8 169 49.1
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 2.0e-25 119.8 170 44.7
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 2.6e-25 119.4 171 45.0
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 3.4e-25 119.0 173 43.4
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 3.4e-25 119.0 177 44.6
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 4.5e-25 118.6 169 48.5
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 4.5e-25 118.6 167 44.9
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 5.9e-25 118.2 169 47.3
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.0e-24 117.5 170 45.9
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 1.3e-24 117.1 176 46.0
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 1.7e-24 116.7 173 45.1
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 1.7e-24 116.7 170 43.5
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 2.2e-24 116.3 171 43.9
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 2.2e-24 116.3 167 43.7
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 2.9e-24 115.9 164 43.9
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 6.5e-24 114.8 177 46.3
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 6.5e-24 114.8 170 47.1
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.4e-23 113.6 168 44.0
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 2.5e-23 112.8 179 43.0
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 3.2e-23 112.5 168 44.0
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 7.2e-23 111.3 167 45.5
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 7.2e-23 111.3 168 44.6
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.2e-22 110.5 140 47.1
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 3.6e-22 109.0 168 42.9
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 4.7e-22 108.6 168 40.5
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 8.0e-22 107.8 175 42.9
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 1.0e-21 107.5 170 42.9
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 1.4e-21 107.1 167 43.1
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.3e-21 106.3 174 45.4
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 3.0e-21 105.9 166 41.6
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 8.8e-21 104.4 166 42.8
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 8.8e-21 104.4 140 47.1
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 1.5e-20 103.6 173 45.1
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 3.3e-20 102.4 169 40.8
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 5.7e-20 101.7 175 41.7
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 7.4e-20 101.3 165 41.2
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 1.7e-19 100.1 169 41.4
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 8.2e-19 97.8 165 38.2
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 1.1e-18 97.4 207 37.2
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 1.4e-18 97.1 168 43.5
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 1.8e-18 96.7 167 42.5
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 1.8e-18 96.7 167 42.5
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 5.3e-18 95.1 166 39.2
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 2.6e-17 92.8 142 43.7
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 3.5e-17 92.4 160 38.8
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 1.7e-16 90.1 169 42.0
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 2.9e-16 89.4 161 41.6
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 6.5e-16 88.2 166 35.5
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 8.5e-16 87.8 168 37.5
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 8.5e-16 87.8 175 40.0
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 8.5e-16 87.8 166 42.8
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 1.1e-15 87.4 171 38.0
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 1.9e-15 86.7 211 35.1
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 1.9e-15 86.7 168 38.7
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 3.2e-15 85.9 211 35.1
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 3.2e-15 85.9 188 37.2
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 3.2e-15 85.9 188 37.2
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 3.2e-15 85.9 188 37.2
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 3.2e-15 85.9 188 37.2
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 3.2e-15 85.9 167 37.1
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 3.2e-15 85.9 166 36.7
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 9.4e-15 84.3 190 35.8
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 1.6e-14 83.6 180 38.9
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 3.6e-14 82.4 153 39.9
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 8.0e-14 81.3 189 36.0
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 6.7e-13 78.2 218 33.5
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 2.6e-12 76.3 190 33.7
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 3.3e-12 75.9 176 35.2
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 3.3e-12 75.9 192 35.4
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 5.7e-12 75.1 163 36.8
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 7.5e-12 74.7 180 34.4
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 9.7e-12 74.3 162 36.4
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 3.7e-11 72.4 156 34.0
Lalb_Chr10g0106921 Lupinus albus HOM05D005769 ORTHO05D006851 8.2e-11 71.2 134 39.6
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 8.2e-11 71.2 169 35.5
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 2.4e-10 69.7 163 36.8
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 2.4e-10 69.7 164 34.8
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 2.4e-10 69.7 165 37.0
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 3.5e-09 65.9 156 34.6
ATR0752G130 Amborella trichopoda HOM05D005769 ORTHO05D006851 1.3e-08 63.9 192 32.8
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 2.9e-08 62.8 169 35.5
Lsat_1_v5_gn_5_125321 Lactuca sativa HOM05D005769 ORTHO05D006851 1.9e-07 60.1 167 31.1
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 4.7e-06 55.5 157 35.0


User provided reference genes

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