Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 0.0e+00 1329.3 712 100.0
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 0.0e+00 1275.8 714 93.8
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 0.0e+00 1143.3 735 84.4
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 2.6e-271 938.7 700 75.9
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.6e-257 891.7 763 69.2
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.6e-249 865.1 764 67.1
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 2.0e-175 620.2 748 57.1
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 1.2e-156 557.8 743 52.8
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 8.0e-156 555.1 865 46.6
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 1.5e-149 534.3 782 49.4
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.2e-143 514.6 751 51.8
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.1e-143 513.8 751 49.1
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.5e-141 507.7 710 50.0
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 3.1e-139 500.0 763 46.4
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 6.8e-139 498.8 741 51.1
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 1.9e-136 490.7 767 49.2
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 1.3e-134 484.6 695 50.2
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 3.9e-134 483.0 707 49.6
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 9.5e-133 478.4 763 48.1
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 1.6e-132 477.6 769 45.9
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 2.1e-132 477.2 787 45.1
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 6.2e-132 475.7 753 46.2
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 1.2e-130 471.5 765 46.0
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 3.4e-130 469.9 742 46.9
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 5.8e-130 469.2 705 46.8
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 7.6e-130 468.8 801 46.2
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 9.9e-130 468.4 778 43.7
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.3e-129 468.0 808 44.4
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 2.4e-128 463.8 821 43.8
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 5.4e-128 462.6 756 46.4
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 1.2e-127 461.5 776 44.3
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 7.8e-127 458.8 761 48.6
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.0e-126 458.4 760 47.1
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 1.7e-126 457.6 734 47.1
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 1.7e-126 457.6 780 44.7
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 5.1e-126 456.1 756 48.8
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 5.1e-126 456.1 746 44.9
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 2.1e-124 450.7 781 45.1
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 4.7e-124 449.5 779 44.3
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.4e-123 448.0 765 45.4
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.4e-123 448.0 776 43.4
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 2.4e-123 447.2 725 44.6
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.0e-122 444.1 766 46.5
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 2.6e-122 443.7 773 44.9
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 1.7e-121 441.0 760 44.3
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 2.2e-121 440.7 810 43.3
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.8e-121 439.9 772 44.8
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 1.9e-120 437.6 733 44.6
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.2e-120 436.4 773 47.9
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 1.6e-119 434.5 760 45.8
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 4.6e-119 433.0 754 46.4
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.3e-118 431.4 665 47.2
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 1.5e-117 427.9 765 48.6
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 3.3e-117 426.8 731 44.0
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 7.3e-117 425.6 769 46.0
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 1.2e-114 418.3 754 43.4
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.2e-114 418.3 762 42.3
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.0e-114 417.5 766 44.3
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 7.6e-114 415.6 808 41.7
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 9.9e-114 415.2 734 42.6
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 2.4e-112 410.6 808 41.6
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 9.3e-112 408.7 708 43.5
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 7.9e-111 405.6 751 43.7
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 3.0e-110 403.7 782 43.2
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 5.1e-110 402.9 750 42.9
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 3.3e-109 400.2 767 44.2
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.3e-108 398.3 701 42.9
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 1.6e-108 397.9 731 43.0
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 3.7e-108 396.7 766 44.0
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 3.1e-107 393.7 745 45.5
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 8.4e-105 385.6 736 43.1
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 1.9e-104 384.4 626 46.8
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.7e-103 380.6 741 42.1
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.3e-102 378.3 745 40.9
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 8.7e-102 375.6 769 41.9
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.1e-99 368.6 737 41.1
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 2.4e-99 367.5 720 43.1
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 3.1e-99 367.1 742 42.2
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 9.0e-99 365.5 723 42.2
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 1.7e-97 361.3 766 42.8
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.2e-97 360.9 665 44.1
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 2.9e-97 360.5 723 44.4
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 6.5e-97 359.4 812 39.2
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 5.5e-96 356.3 698 40.4
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 1.2e-95 355.1 766 39.9
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 2.1e-95 354.4 766 39.8
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 6.1e-95 352.8 633 46.4
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.3e-94 350.9 754 39.8
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 1.5e-93 348.2 774 38.8
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 4.3e-93 346.7 694 40.2
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 2.8e-92 344.0 775 39.5
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 3.7e-92 343.6 751 40.5
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 4.8e-92 343.2 803 39.1
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.1e-91 342.0 728 40.2
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.4e-90 337.0 671 40.7
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 7.7e-90 335.9 692 41.8
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 3.8e-89 333.6 738 41.9
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.1e-88 332.0 676 41.3
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.4e-88 331.6 750 42.0
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 1.9e-88 331.3 713 39.6
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 3.0e-86 323.9 804 38.6
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 3.9e-86 323.6 756 42.1
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.3e-84 318.5 694 39.0
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 3.7e-84 317.0 768 36.3
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 4.8e-84 316.6 714 37.8
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.4e-83 315.1 741 37.7
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 9.1e-83 312.4 811 35.6
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 1.9e-80 304.7 817 34.6
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 2.7e-79 300.8 690 40.6
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 2.0e-77 294.7 689 38.5
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 1.5e-74 285.0 687 36.5
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 1.7e-73 281.6 775 35.4
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 3.8e-73 280.4 758 36.7
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.1e-72 278.9 784 36.4
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.5e-72 278.5 751 36.9
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.4e-70 271.9 763 37.9
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 8.8e-70 269.2 727 35.8
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 5.7e-69 266.5 733 36.2
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 2.2e-68 264.6 684 35.1
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 8.8e-62 242.7 718 35.0
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 3.1e-59 234.2 718 33.4
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 5.9e-58 229.9 254 56.3
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 5.5e-56 223.4 604 35.9
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.1e-55 221.5 702 32.1
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 6.8e-54 216.5 705 31.9
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 6.8e-54 216.5 797 34.1
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 5.7e-53 213.4 764 32.3
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 5.7e-53 213.4 764 32.3
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.3e-52 212.2 704 31.0
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 8.3e-52 209.5 768 32.0
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.8e-51 208.4 780 34.6
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 5.4e-51 206.8 763 32.0
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 9.1e-51 206.1 646 32.7
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 5.0e-49 200.3 650 31.7
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 1.1e-48 199.1 682 32.0
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 3.3e-48 197.6 650 31.4
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 4.2e-48 197.2 757 31.7
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 9.5e-48 196.1 650 31.4
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 3.6e-47 194.1 857 30.6
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 3.0e-46 191.0 866 32.0
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 4.4e-45 187.2 594 33.8
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 9.8e-45 186.0 157 64.3
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.1e-43 182.6 694 33.1
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.0e-42 178.3 776 30.7
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 4.6e-42 177.2 721 30.8
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 5.9e-42 176.8 608 33.4
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 8.6e-41 172.9 360 38.3
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 1.5e-40 172.2 217 51.6
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 4.3e-40 170.6 885 29.2
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.6e-39 168.7 458 39.5
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 2.3e-38 164.9 451 38.1
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 2.0e-37 161.8 222 48.6
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.7e-36 158.7 230 47.0
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 4.6e-34 150.6 493 35.7
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 3.0e-33 147.9 259 41.3
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 7.3e-32 143.3 129 58.9
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.6e-31 142.1 392 34.4
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 4.7e-31 140.6 192 47.4
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 2.3e-30 138.3 153 56.2
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 5.4e-27 127.1 164 50.0
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 5.1e-25 120.6 102 70.6
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 2.1e-23 115.2 114 57.9
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 3.6e-23 114.4 116 65.5
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.9e-17 94.4 390 29.0
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 6.8e-14 83.6 671 27.1
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.2e-13 82.8 264 29.5
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.3e-12 79.3 185 35.7
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 7.8e-10 70.1 70 60.0
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.3e-09 69.3 51 72.5
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.1e-08 66.2 307 27.0
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 3.3e-08 64.7 301 27.6
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 4.8e-07 60.8 298 27.2
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 6.2e-07 60.5 608 23.5
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 5.3e-06 57.4 362 25.4
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 5.3e-06 57.4 340 28.8
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 9.0e-06 56.6 314 25.5


User provided reference genes

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