Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 0.0e+00 1137.9 570 100.0
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 0.0e+00 1133.6 570 99.5
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 0.0e+00 1125.5 570 98.4
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 2.7e-303 1044.6 570 91.9
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 4.6e-271 937.6 573 79.4
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 4.9e-265 917.5 570 78.9
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 1.9e-264 915.6 568 79.2
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 3.2e-264 914.8 569 77.7
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 1.6e-263 912.5 570 78.1
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 1.1e-261 906.4 571 77.1
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 9.6e-261 903.3 574 76.8
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 6.2e-260 900.6 565 77.5
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 6.2e-260 900.6 565 77.2
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 1.4e-259 899.4 571 76.9
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 2.4e-259 898.7 574 76.3
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 1.2e-258 896.3 573 77.3
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 4.5e-258 894.4 578 76.6
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 5.8e-258 894.0 578 75.6
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 5.8e-258 894.0 570 76.3
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 7.6e-258 893.6 569 75.6
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 5.5e-256 887.5 570 75.8
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 1.6e-255 885.9 601 73.9
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 2.1e-255 885.6 577 75.0
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 2.7e-255 885.2 570 75.6
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 3.5e-255 884.8 570 75.6
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 6.0e-255 884.0 571 75.5
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 1.0e-254 883.2 573 75.2
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.0e-254 883.2 570 75.4
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 1.3e-254 882.9 571 75.5
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 3.0e-254 881.7 570 74.7
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 2.5e-253 878.6 571 75.8
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 9.6e-253 876.7 550 77.8
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 4.8e-252 874.4 570 75.3
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 5.3e-251 870.9 567 74.6
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 1.2e-250 869.8 572 74.7
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 1.5e-250 869.4 567 75.0
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 1.5e-250 869.4 572 74.8
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 1.5e-250 869.4 576 74.5
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 4.5e-250 867.8 570 74.6
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 5.8e-250 867.5 571 74.4
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 5.8e-250 867.5 579 73.9
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 1.3e-249 866.3 572 73.6
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 2.2e-249 865.5 570 73.5
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 6.5e-249 864.0 514 80.7
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 1.1e-248 863.2 577 74.4
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 1.4e-248 862.8 571 74.1
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 1.9e-248 862.4 550 76.2
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 3.2e-248 861.7 568 73.6
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 5.5e-248 860.9 570 74.7
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 2.3e-246 855.5 569 74.2
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 3.9e-246 854.7 568 73.1
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 6.7e-246 854.0 568 72.9
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 8.7e-246 853.6 568 72.9
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 1.5e-245 852.8 568 73.2
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 2.5e-245 852.0 572 71.5
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 2.5e-245 852.0 560 73.4
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 3.3e-245 851.7 568 72.7
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 4.3e-245 851.3 568 73.4
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 5.7e-245 850.9 568 73.1
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 5.7e-245 850.9 568 73.1
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 5.7e-245 850.9 574 72.8
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 9.7e-245 850.1 576 72.9
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 1.6e-244 849.4 566 73.3
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 2.2e-244 849.0 568 72.4
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 2.8e-244 848.6 568 72.5
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 8.2e-244 847.0 568 72.2
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 1.4e-243 846.3 572 72.2
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 1.8e-243 845.9 569 72.8
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 1.8e-243 845.9 574 72.1
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 1.8e-243 845.9 568 72.4
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 2.4e-243 845.5 567 72.3
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 2.4e-243 845.5 564 72.7
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 5.3e-243 844.3 556 73.9
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 5.9e-242 840.9 554 72.9
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 1.3e-241 839.7 573 72.9
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 1.7e-241 839.3 594 69.7
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 2.2e-241 839.0 573 72.6
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 2.9e-241 838.6 563 73.2
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 3.8e-241 838.2 572 72.9
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 6.5e-241 837.4 621 68.3
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 1.1e-240 836.6 566 72.6
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 2.5e-240 835.5 531 75.5
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 3.2e-240 835.1 572 72.6
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 4.2e-240 834.7 572 72.2
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 4.2e-240 834.7 528 75.9
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 1.6e-239 832.8 586 70.3
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 1.8e-238 829.3 552 72.1
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 3.0e-238 828.6 514 76.5
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 5.1e-238 827.8 531 74.8
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 2.4e-235 818.9 577 71.2
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 8.5e-233 810.4 568 70.6
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 3.2e-232 808.5 565 72.6
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 3.2e-232 808.5 531 75.1
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 9.4e-232 807.0 568 69.9
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 1.6e-231 806.2 572 69.2
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 2.6e-229 798.9 528 72.9
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 1.2e-226 790.0 436 90.8
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 1.5e-224 783.1 509 74.9
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 5.2e-222 774.6 558 69.7
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 4.7e-215 751.5 481 76.3
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 4.5e-210 734.9 568 66.2
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 1.3e-209 733.4 616 60.7
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 1.4e-203 713.4 448 77.2
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 6.4e-196 688.0 439 76.5
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 2.6e-189 666.0 431 76.6
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 1.4e-187 660.2 428 75.0
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 7.0e-187 657.9 408 76.7
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 2.2e-180 636.3 433 74.4
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 5.2e-174 615.1 541 56.2
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 1.2e-173 614.0 426 72.8
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 6.6e-161 571.6 433 68.1
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 3.1e-150 536.2 558 51.4
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 7.6e-149 531.6 569 50.6
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 1.3e-148 530.8 371 73.6
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 1.3e-143 514.2 553 51.7
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 2.2e-119 433.7 382 60.5
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 5.9e-117 425.6 583 40.5
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 1.7e-116 424.1 278 81.3
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 1.4e-110 404.4 584 47.3
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 4.7e-90 336.3 220 70.0
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 5.7e-88 329.3 212 79.2
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 2.1e-82 310.8 217 73.3
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 3.2e-78 297.0 223 61.9
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 2.6e-72 277.3 576 33.2
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 1.3e-68 265.0 594 32.3
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 1.1e-57 228.8 556 31.7
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 9.2e-54 215.7 148 76.4
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 4.6e-53 213.4 151 72.8
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 6.0e-53 213.0 126 78.6
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 3.6e-50 203.8 139 76.3
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 1.5e-40 171.8 183 59.0
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 1.3e-39 168.7 95 75.8
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 3.2e-38 164.1 138 67.4
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 4.8e-26 123.6 88 71.6
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 5.1e-20 103.6 77 63.6
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 6.5e-15 86.7 64 57.8
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 8.5e-15 86.3 50 72.0
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 2.1e-13 81.6 59 76.3
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 3.6e-13 80.9 49 75.5


User provided reference genes

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