Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 5.7e-264 913.7 456 100.0
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 1.4e-262 909.1 456 99.3
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 2.9e-260 901.4 456 98.5
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 6.5e-252 873.6 456 94.7
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 2.7e-250 868.2 456 94.5
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 2.8e-247 858.2 456 93.6
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 6.8e-241 837.0 454 90.7
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 2.1e-213 745.7 461 80.0
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 3.9e-212 741.5 460 78.7
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 1.9e-211 739.2 454 79.5
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 8.1e-210 733.8 457 77.9
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 4.1e-206 721.5 460 78.3
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 3.9e-204 714.9 463 76.7
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 2.5e-203 712.2 463 76.2
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 9.6e-203 710.3 460 76.3
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 8.1e-202 707.2 466 76.4
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 4.9e-199 698.0 461 75.9
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 8.4e-199 697.2 473 74.2
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 4.2e-198 694.9 460 76.1
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 3.9e-196 688.3 461 74.8
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 9.6e-195 683.7 459 74.3
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 9.6e-195 683.7 455 74.1
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 2.8e-194 682.2 460 73.7
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 2.8e-194 682.2 462 72.1
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 3.6e-194 681.8 458 72.9
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 1.4e-193 679.9 459 73.4
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 1.8e-193 679.5 455 73.4
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 5.3e-193 677.9 462 72.1
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 6.9e-193 677.6 477 71.5
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 1.2e-192 676.8 463 72.8
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 1.5e-192 676.4 460 73.3
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 3.4e-192 675.2 459 72.5
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 4.5e-192 674.9 460 71.7
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 4.5e-192 674.9 455 74.5
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 2.4e-190 669.1 455 71.6
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 3.2e-190 668.7 457 72.4
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 9.3e-190 667.2 462 71.9
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 1.2e-189 666.8 448 73.0
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 1.6e-189 666.4 462 72.1
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 2.1e-189 666.0 463 71.1
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 2.7e-189 665.6 462 72.3
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 2.7e-189 665.6 457 71.8
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 6.0e-189 664.5 462 71.6
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 6.0e-189 664.5 473 70.4
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 7.9e-189 664.1 457 71.6
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 1.3e-188 663.3 462 70.8
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 2.3e-188 662.5 462 71.4
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 2.3e-188 662.5 477 69.6
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 2.3e-188 662.5 460 70.9
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 5.1e-188 661.4 463 69.5
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 5.1e-188 661.4 455 71.2
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 6.7e-188 661.0 461 71.6
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 8.7e-188 660.6 458 72.3
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 1.1e-187 660.2 462 71.6
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 1.5e-187 659.8 457 73.3
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 4.3e-187 658.3 462 70.1
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 5.6e-187 657.9 455 70.5
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 3.7e-186 655.2 459 71.9
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 6.2e-186 654.4 452 71.7
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 6.2e-186 654.4 455 70.5
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 8.1e-186 654.1 452 71.9
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 8.1e-186 654.1 459 69.7
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 1.4e-185 653.3 461 70.1
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 1.8e-185 652.9 456 71.5
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 1.8e-185 652.9 456 71.5
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 3.1e-185 652.1 461 70.1
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 5.3e-185 651.4 464 69.6
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 2.0e-184 649.4 464 69.6
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 5.8e-184 647.9 458 68.6
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 1.7e-183 646.4 454 70.5
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 2.2e-183 646.0 459 68.8
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 3.8e-183 645.2 426 75.1
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 4.9e-183 644.8 461 70.7
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.9e-182 642.9 455 69.9
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 9.3e-182 640.6 460 70.0
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 2.7e-181 639.0 460 68.7
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 1.8e-180 636.3 463 68.5
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 2.3e-180 636.0 472 69.1
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 3.0e-180 635.6 501 64.9
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 2.1e-178 629.4 458 67.7
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 4.8e-178 628.2 445 70.6
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 4.0e-177 625.2 468 68.2
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 9.0e-177 624.0 457 68.7
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 1.2e-176 623.6 461 68.8
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 5.5e-174 614.8 513 62.0
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 2.9e-167 592.4 456 65.1
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 6.5e-167 591.3 471 65.6
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 2.5e-166 589.3 457 65.9
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 3.2e-166 589.0 401 70.8
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 3.3e-163 578.9 410 68.8
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 5.3e-161 571.6 460 62.8
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 5.9e-160 568.2 411 67.4
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 1.9e-158 563.1 427 66.5
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 7.9e-157 557.8 462 62.6
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 1.7e-151 540.0 462 62.3
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 1.1e-147 527.3 474 60.8
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 2.2e-135 486.5 450 53.8
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 5.0e-135 485.3 417 62.1
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 2.1e-133 479.9 311 77.5
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 1.0e-127 461.1 342 67.0
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 2.5e-118 429.9 299 72.2
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 9.8e-115 417.9 281 71.5
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 3.0e-111 406.4 303 66.7
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.3e-103 380.9 332 62.0
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 9.5e-102 374.8 453 45.9
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.1e-100 371.3 345 58.8
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 6.0e-96 355.5 410 47.8
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 1.2e-93 347.8 453 48.1
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 3.4e-91 339.7 467 44.1
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 2.9e-90 336.7 378 50.8
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 8.7e-87 325.1 465 39.4
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 2.8e-85 320.1 455 41.5
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 8.1e-85 318.5 227 65.6
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.7e-82 310.8 301 55.8
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 1.1e-81 308.1 231 67.5
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 1.7e-74 284.3 243 63.8
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 1.3e-71 274.6 256 52.3
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 1.5e-62 244.6 119 99.2
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 7.4e-62 242.3 164 69.5
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 7.1e-57 225.7 161 68.3
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 8.2e-45 185.7 158 64.6
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 3.2e-41 173.7 128 69.5
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 1.1e-38 165.2 124 63.7
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 2.0e-38 164.5 123 64.2
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 3.3e-38 163.7 120 68.3
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 1.0e-34 152.1 82 90.2
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 4.2e-25 120.2 102 64.7
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 8.8e-23 112.5 413 26.9
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 9.1e-20 102.4 103 52.4
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 1.8e-15 88.2 52 78.8
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 1.6e-11 75.1 63 60.3
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 7.7e-11 72.8 54 72.2


User provided reference genes

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