Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 1.7e-172 609.4 347 100.0
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.8e-164 582.8 347 96.8
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 4.6e-149 531.6 346 90.5
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.6e-101 373.6 300 65.7
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 9.2e-89 331.3 300 60.7
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 1.4e-84 317.4 299 59.5
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.6e-48 197.6 297 45.8
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 9.6e-46 188.3 297 44.4
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 9.6e-38 161.8 271 43.5
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 3.1e-36 156.8 224 47.8
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 6.9e-36 155.6 296 36.8
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 3.8e-34 149.8 292 37.0
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 4.6e-32 142.9 233 37.3
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 5.1e-31 139.4 295 35.6
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 1.9e-30 137.5 232 39.2
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 1.3e-29 134.8 218 39.9
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 1.3e-29 134.8 239 39.3
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 1.3e-29 134.8 254 36.6
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 2.2e-29 134.0 232 39.7
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 6.3e-29 132.5 313 38.0
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 6.3e-29 132.5 215 38.1
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 5.3e-28 129.4 214 39.7
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 9.0e-28 128.6 207 39.6
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 1.2e-27 128.3 273 34.1
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 2.0e-27 127.5 163 44.2
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 3.4e-27 126.7 195 41.0
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 3.4e-27 126.7 209 40.2
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 4.5e-27 126.3 278 33.1
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 7.7e-27 125.6 185 36.2
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 7.7e-27 125.6 178 39.9
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.3e-26 124.8 120 48.3
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 1.7e-26 124.4 293 32.8
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 2.2e-26 124.0 201 38.8
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 2.2e-26 124.0 113 53.1
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 2.2e-26 124.0 217 35.5
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 2.9e-26 123.6 205 37.1
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 5.0e-26 122.9 209 37.8
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 8.5e-26 122.1 222 36.9
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 1.1e-25 121.7 196 39.3
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 1.1e-25 121.7 199 37.2
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 1.9e-25 120.9 90 54.4
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 2.5e-25 120.6 278 32.7
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 3.2e-25 120.2 219 39.7
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 4.2e-25 119.8 284 31.3
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 4.2e-25 119.8 179 39.7
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 5.5e-25 119.4 309 33.3
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 7.2e-25 119.0 183 35.0
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 7.2e-25 119.0 232 34.9
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 9.4e-25 118.6 194 34.0
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 9.4e-25 118.6 200 38.0
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 9.4e-25 118.6 275 32.4
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 2.1e-24 117.5 205 34.6
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 2.1e-24 117.5 290 32.1
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 2.7e-24 117.1 90 53.3
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 2.7e-24 117.1 107 53.3
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 3.6e-24 116.7 216 37.5
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 4.6e-24 116.3 136 44.1
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 4.6e-24 116.3 280 29.3
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 6.1e-24 115.9 113 54.9
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 1.0e-23 115.2 292 29.5
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 1.4e-23 114.8 220 39.5
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 1.8e-23 114.4 90 51.1
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 1.8e-23 114.4 210 41.9
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 2.3e-23 114.0 189 37.6
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 3.9e-23 113.2 113 47.8
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 5.1e-23 112.8 183 34.4
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 5.1e-23 112.8 241 34.4
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 6.7e-23 112.5 221 37.6
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 1.1e-22 111.7 185 37.8
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 2.0e-22 110.9 106 49.1
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 2.0e-22 110.9 303 34.3
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 3.3e-22 110.2 279 29.7
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 4.3e-22 109.8 86 52.3
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 5.7e-22 109.4 154 42.2
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 7.4e-22 109.0 220 34.5
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 7.4e-22 109.0 217 35.9
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 9.7e-22 108.6 118 48.3
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.3e-21 108.2 165 40.0
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 2.2e-21 107.5 125 44.0
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 2.8e-21 107.1 171 39.8
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 3.7e-21 106.7 102 48.0
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 6.3e-21 105.9 122 44.3
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 2.4e-20 104.0 217 34.6
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 2.4e-20 104.0 108 46.3
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 3.1e-20 103.6 180 36.7
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 4.1e-20 103.2 202 35.6
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 4.1e-20 103.2 215 33.5
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 4.1e-20 103.2 239 32.2
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 5.3e-20 102.8 218 32.6
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 5.3e-20 102.8 179 35.8
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 6.9e-20 102.4 112 45.5
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 1.2e-19 101.7 183 38.8
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 1.3e-18 98.2 191 35.1
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 2.2e-18 97.4 295 32.2
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 5.0e-18 96.3 201 32.8
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 6.5e-18 95.9 258 33.3
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 1.1e-17 95.1 189 38.6
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.1e-17 95.1 185 34.6
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.9e-17 94.4 122 37.7
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 2.5e-17 94.0 258 29.5
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 2.5e-17 94.0 199 34.2
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 4.2e-17 93.2 87 47.1
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 4.2e-17 93.2 191 35.6
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 2.1e-16 90.9 94 44.7
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.7e-16 90.5 80 48.8
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 3.6e-16 90.1 191 33.0
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 7.9e-16 89.0 182 33.0
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 1.4e-15 88.2 181 34.3
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 1.4e-15 88.2 181 34.3
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.8e-15 87.8 181 34.3
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 2.3e-15 87.4 205 32.7
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 3.9e-15 86.7 101 44.6
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 5.1e-15 86.3 69 62.3
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 1.5e-14 84.7 182 37.4
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 2.0e-14 84.3 182 37.4
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.7e-13 81.3 190 30.5
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 4.8e-13 79.7 117 30.8
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.8e-12 77.8 94 46.8
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 4.1e-12 76.6 175 34.3
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 7.7e-11 72.4 75 45.3
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 7.7e-11 72.4 132 29.5
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 1.3e-10 71.6 76 47.4
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.5e-09 67.4 47 59.6


User provided reference genes

Program Settings