Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 1.6e-92 342.8 182 100.0
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 1.8e-91 339.3 182 98.4
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 1.8e-91 339.3 182 98.4
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 2.6e-87 325.5 182 94.5
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 4.5e-87 324.7 182 94.0
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 5.0e-86 321.2 182 92.9
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.6e-82 308.9 224 76.3
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.6e-79 299.7 181 84.5
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 3.5e-79 298.5 181 83.4
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 7.7e-79 297.4 179 86.0
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.0e-78 297.0 181 84.5
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 2.2e-78 295.8 178 86.5
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 3.8e-78 295.0 181 84.0
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.5e-77 293.1 181 84.0
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.5e-77 293.1 181 84.0
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.5e-77 292.4 181 83.4
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.5e-77 292.4 182 83.5
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.2e-77 292.0 181 83.4
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 3.2e-77 292.0 181 81.8
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 3.2e-77 292.0 181 83.4
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 4.2e-77 291.6 178 83.1
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 4.2e-77 291.6 181 83.4
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 4.2e-77 291.6 182 83.5
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 7.2e-77 290.8 178 84.3
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 9.4e-77 290.4 181 80.1
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 2.1e-76 289.3 181 82.9
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 2.1e-76 289.3 182 80.8
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.1e-76 289.3 180 84.4
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 2.1e-76 289.3 181 82.3
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 2.7e-76 288.9 181 80.1
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 3.6e-76 288.5 181 82.3
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 3.6e-76 288.5 181 82.3
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 3.6e-76 288.5 178 82.6
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 6.1e-76 287.7 181 82.3
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 6.1e-76 287.7 180 81.7
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 8.0e-76 287.3 179 82.7
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 2.3e-75 285.8 181 80.7
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 2.3e-75 285.8 203 75.9
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 3.0e-75 285.4 181 81.2
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 6.8e-75 284.3 178 80.9
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 8.8e-75 283.9 178 80.3
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 8.8e-75 283.9 178 81.5
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 1.2e-74 283.5 178 80.9
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 2.6e-74 282.3 181 80.7
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.6e-74 282.3 181 82.3
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.6e-74 282.3 182 80.2
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.6e-74 282.3 179 81.0
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 4.4e-74 281.6 182 79.7
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 5.7e-74 281.2 181 78.5
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 5.7e-74 281.2 176 81.2
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 5.7e-74 281.2 178 80.3
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 7.5e-74 280.8 181 77.3
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 7.5e-74 280.8 182 78.6
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 9.8e-74 280.4 178 79.8
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 2.2e-73 279.3 178 78.7
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 2.2e-73 279.3 180 80.0
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 2.8e-73 278.9 179 81.0
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 2.8e-73 278.9 182 79.7
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 2.8e-73 278.9 181 79.6
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 3.7e-73 278.5 181 76.8
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 3.7e-73 278.5 179 80.4
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 6.3e-73 277.7 179 81.0
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 6.3e-73 277.7 178 79.2
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 1.1e-72 276.9 182 80.8
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 1.1e-72 276.9 180 80.0
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 1.4e-72 276.6 179 80.4
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 1.4e-72 276.6 178 78.7
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 2.4e-72 275.8 181 79.6
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 2.4e-72 275.8 178 79.2
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 3.1e-72 275.4 181 77.9
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 1.2e-71 273.5 181 78.5
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 1.2e-71 273.5 181 77.9
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 1.6e-71 273.1 181 78.5
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 1.6e-71 273.1 181 77.9
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 3.5e-71 271.9 181 77.3
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 4.5e-71 271.6 181 77.9
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 1.0e-70 270.4 178 78.1
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 1.0e-70 270.4 181 76.8
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 1.0e-70 270.4 178 78.1
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 2.9e-70 268.9 178 77.5
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 3.8e-70 268.5 181 75.7
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 5.0e-70 268.1 181 76.2
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 5.0e-70 268.1 181 76.2
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 5.0e-70 268.1 181 76.2
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 5.0e-70 268.1 178 75.8
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 6.5e-70 267.7 181 76.2
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 1.5e-69 266.5 181 75.7
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 2.5e-69 265.8 182 75.8
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 3.6e-68 261.9 181 76.2
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 6.1e-68 261.2 177 76.3
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 8.0e-68 260.8 181 74.6
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 8.8e-67 257.3 178 71.9
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 2.0e-66 256.1 179 73.2
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 1.4e-64 250.0 155 82.6
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 2.0e-63 246.1 178 70.2
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 2.3e-62 242.7 153 79.7
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 2.3e-62 242.7 153 79.7
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.9e-61 239.6 153 79.7
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 4.7e-60 235.0 153 77.1
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 6.1e-60 234.6 153 77.8
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 3.2e-56 222.2 170 64.1
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 3.2e-56 222.2 173 64.2
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.3e-54 216.9 175 63.4
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 3.3e-53 212.2 178 61.2
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 3.3e-53 212.2 328 42.4
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 4.3e-53 211.8 178 58.4
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 5.6e-53 211.5 170 63.5
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 5.2e-51 204.9 117 90.6
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.2e-50 203.8 113 92.9
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 4.4e-50 201.8 119 87.4
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 4.9e-49 198.4 119 86.6
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 8.6e-46 187.6 219 51.6
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 3.3e-45 185.7 117 82.9
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.6e-44 183.3 111 87.4
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 2.3e-43 179.5 148 66.9
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 2.2e-41 172.9 176 55.1
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 4.9e-41 171.8 180 52.8
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 5.8e-34 148.3 105 70.5
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 4.1e-32 142.1 129 59.7
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 7.1e-32 141.4 77 92.2
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 3.5e-31 139.0 80 88.8
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 5.2e-27 125.2 76 80.3
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.5e-26 123.6 78 78.2
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 3.8e-25 119.0 71 84.5
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 4.9e-25 118.6 75 81.3
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 2.1e-15 86.7 62 66.1
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 7.1e-08 61.6 41 65.9
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 1.2e-07 60.8 40 67.5
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 3.5e-07 59.3 42 69.0
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 3.5e-07 59.3 41 63.4


User provided reference genes

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