Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 1.2e-180 636.3 315 100.0
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 9.0e-176 620.2 315 98.1
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.1e-168 596.7 315 94.0
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 1.1e-154 550.1 315 86.7
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 3.6e-148 528.5 315 83.8
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 5.5e-141 504.6 305 82.3
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 2.1e-140 502.7 286 86.7
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 1.0e-126 457.2 316 73.4
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 2.2e-126 456.1 315 72.4
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 6.5e-126 454.5 316 71.5
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.4e-123 446.8 319 71.5
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 4.0e-123 445.3 316 71.5
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 7.5e-122 441.0 316 70.3
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 8.3e-121 437.6 316 69.6
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 1.8e-120 436.4 319 66.5
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 9.1e-120 434.1 315 67.3
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.7e-119 432.6 316 66.8
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 1.0e-118 430.6 335 65.7
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 4.7e-116 421.8 312 65.4
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 5.2e-115 418.3 317 65.3
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 5.2e-115 418.3 310 66.5
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 4.4e-114 415.2 312 65.4
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 5.7e-114 414.8 314 64.6
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.3e-113 413.7 363 59.5
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 2.8e-113 412.5 310 66.1
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 6.3e-113 411.4 315 66.0
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 8.3e-113 411.0 310 65.2
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 1.8e-112 409.8 312 63.8
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 2.4e-112 409.5 319 65.2
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 4.1e-112 408.7 315 64.8
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 9.2e-112 407.5 314 63.7
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 1.2e-111 407.1 307 68.1
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 1.6e-111 406.8 315 63.8
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 2.0e-111 406.4 316 63.6
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 3.5e-111 405.6 314 63.1
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 4.5e-111 405.2 316 64.6
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 4.5e-111 405.2 310 63.9
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 5.9e-111 404.8 310 64.8
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 7.8e-111 404.4 314 62.4
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 7.8e-111 404.4 310 63.9
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 3.8e-110 402.1 278 68.7
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 8.6e-110 401.0 316 63.9
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 1.1e-109 400.6 281 67.6
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 1.5e-109 400.2 314 63.7
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 3.3e-109 399.1 281 70.5
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 4.3e-109 398.7 315 64.8
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 9.5e-109 397.5 314 61.5
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.2e-108 397.1 315 63.2
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 1.2e-108 397.1 313 61.7
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 1.6e-108 396.7 314 64.3
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 2.1e-108 396.4 309 63.1
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 3.6e-108 395.6 314 62.4
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.4e-107 393.7 309 63.1
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 3.0e-107 392.5 310 62.9
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 4.0e-107 392.1 313 62.6
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 5.2e-107 391.7 325 61.2
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 1.2e-106 390.6 313 61.0
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 5.7e-106 388.3 324 60.5
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 2.9e-105 386.0 310 61.3
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 4.9e-105 385.2 310 61.3
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 8.3e-105 384.4 313 62.0
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 8.3e-105 384.4 313 62.0
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 1.8e-104 383.3 315 61.9
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 3.2e-104 382.5 317 62.1
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 3.2e-104 382.5 312 61.2
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 7.0e-104 381.3 281 64.8
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 9.2e-104 380.9 312 61.9
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 3.5e-103 379.0 308 59.4
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 4.6e-103 378.6 314 60.5
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 3.0e-102 375.9 275 66.5
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 1.1e-101 374.0 315 62.2
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.1e-101 374.0 314 60.8
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 1.5e-101 373.6 319 59.9
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 5.6e-101 371.7 282 65.2
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 4.7e-100 368.6 309 60.5
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 4.7e-100 368.6 313 60.7
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.8e-99 366.7 283 63.6
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 1.8e-99 366.7 314 59.2
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 2.3e-99 366.3 296 60.1
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 8.9e-99 364.4 311 60.8
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 4.4e-98 362.1 276 61.2
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 5.8e-98 361.7 324 54.9
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 1.9e-96 356.7 327 56.6
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 2.7e-95 352.8 334 55.4
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.7e-94 350.1 317 57.1
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 5.0e-94 348.6 278 64.7
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 9.5e-93 344.4 315 57.8
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 2.8e-92 342.8 243 72.0
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 6.8e-91 338.2 315 56.5
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 2.6e-90 336.3 279 59.5
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 4.4e-90 335.5 309 55.7
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 5.8e-90 335.1 309 56.3
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 9.9e-90 334.3 309 55.7
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 2.9e-89 332.8 311 54.7
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 2.9e-89 332.8 309 55.7
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 2.9e-89 332.8 233 73.0
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 8.3e-89 331.3 313 55.9
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 1.4e-88 330.5 309 55.7
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 1.9e-88 330.1 309 55.3
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 1.9e-88 330.1 309 55.3
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 5.4e-88 328.6 309 55.3
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 7.1e-88 328.2 309 54.7
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 9.2e-88 327.8 316 54.1
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 1.2e-87 327.4 309 55.0
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.2e-87 327.4 309 54.7
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 2.1e-87 326.6 309 55.0
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 3.5e-87 325.9 309 54.7
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 3.5e-87 325.9 309 55.0
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 2.3e-86 323.2 243 66.3
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.6e-84 317.0 249 60.2
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 2.8e-84 316.2 316 54.4
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 1.8e-83 313.5 282 56.0
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 7.6e-82 308.1 269 57.6
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.7e-81 307.0 268 59.7
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 8.4e-81 304.7 283 55.5
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 2.4e-80 303.1 249 63.1
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 7.3e-77 291.6 221 63.8
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 4.9e-73 278.9 318 48.1
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 1.6e-71 273.9 328 46.0
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 2.1e-71 273.5 276 49.6
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 4.0e-67 259.2 285 45.6
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 2.9e-65 253.1 199 59.8
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.1e-48 198.0 173 58.4
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.9e-48 197.2 191 52.4
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 7.1e-48 195.3 194 56.2
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 1.7e-41 174.1 140 62.1
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 8.8e-38 161.8 278 37.4
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.7e-36 157.5 109 67.0
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 7.9e-31 138.7 107 63.6
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 2.1e-23 114.0 116 54.3
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.1e-11 75.1 138 37.7
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 1.6e-10 71.2 269 27.9


User provided reference genes

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