Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 0.0e+00 1417.1 704 100.0
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 0.0e+00 1402.9 704 98.9
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 0.0e+00 1226.1 752 84.0
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 0.0e+00 1200.3 697 85.4
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 0.0e+00 1119.8 672 82.0
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 3.3e-255 885.2 706 63.3
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 4.0e-248 861.7 754 62.6
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 2.0e-239 832.8 711 58.4
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 4.4e-239 831.6 705 61.0
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 1.5e-231 806.6 707 57.9
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 7.5e-231 804.3 711 58.5
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 1.2e-228 797.0 713 58.2
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 1.4e-213 746.9 728 54.0
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 6.6e-211 738.0 713 52.9
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 4.7e-209 731.9 708 51.8
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 2.4e-208 729.6 710 52.3
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 6.8e-208 728.0 702 54.1
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 8.9e-208 727.6 714 53.1
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 5.8e-207 724.9 706 53.1
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 4.6e-204 715.3 712 51.3
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 7.8e-204 714.5 665 55.5
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 6.2e-201 704.9 707 51.6
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.2e-199 700.7 665 55.2
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 1.5e-199 700.3 712 52.2
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 4.4e-199 698.7 706 51.6
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 7.6e-199 698.0 706 50.8
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 9.9e-199 697.6 708 50.4
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 2.9e-198 696.0 711 52.5
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.9e-197 693.3 711 49.9
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 4.2e-197 692.2 704 51.1
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 7.1e-197 691.4 702 50.7
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 8.7e-195 684.5 703 52.3
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 3.3e-194 682.6 708 51.0
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 1.6e-193 680.2 703 50.8
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 3.6e-193 679.1 709 50.9
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 3.6e-193 679.1 734 50.3
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 1.2e-191 674.1 705 50.9
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 4.2e-189 665.6 683 52.7
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 2.1e-188 663.3 706 50.0
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 4.6e-188 662.1 810 49.3
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 1.0e-187 661.0 710 50.0
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 8.7e-187 657.9 675 50.2
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.9e-186 656.8 704 50.7
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 3.3e-186 656.0 669 53.5
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 4.3e-186 655.6 711 50.5
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 8.1e-185 651.4 711 49.9
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 1.1e-184 651.0 710 48.3
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 1.8e-184 650.2 712 48.7
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 1.2e-183 647.5 713 49.8
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 9.9e-183 644.4 705 49.5
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.3e-182 644.0 713 49.4
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 2.5e-181 639.8 716 46.9
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 2.5e-181 639.8 672 50.0
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.0e-179 634.4 702 50.0
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 1.3e-179 634.0 709 48.0
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 1.9e-178 630.2 745 46.6
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 1.6e-177 627.1 722 47.8
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 4.8e-177 625.5 683 50.1
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 2.4e-176 623.2 714 48.2
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.0e-175 620.2 692 48.7
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 3.4e-175 619.4 624 51.9
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 1.7e-174 617.1 704 47.7
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 7.1e-173 611.7 710 46.1
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 3.0e-171 606.3 546 56.4
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 5.7e-170 602.1 717 45.9
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 7.4e-170 601.7 692 48.0
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 1.6e-169 600.5 700 44.7
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 4.8e-169 599.0 706 44.5
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 1.4e-168 597.4 705 44.8
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 1.8e-168 597.0 705 45.0
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.8e-168 597.0 702 45.0
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 4.1e-168 595.9 712 46.1
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 9.0e-168 594.7 705 44.8
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 3.4e-167 592.8 715 46.0
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 3.4e-167 592.8 707 45.8
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 1.1e-165 587.8 664 46.1
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 9.4e-165 584.7 732 43.3
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.7e-164 583.2 720 46.1
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 1.1e-162 577.8 703 44.8
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 6.3e-161 572.0 707 45.1
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 4.5e-159 565.8 697 44.3
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.2e-158 563.5 707 44.0
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 2.9e-158 563.1 701 44.5
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 5.0e-158 562.4 678 46.3
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 4.7e-156 555.8 719 43.4
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 1.3e-153 547.7 712 45.6
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.2e-153 547.0 678 44.4
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 2.2e-153 547.0 716 42.9
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 6.3e-153 545.4 714 42.4
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 6.3e-153 545.4 710 44.5
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.2e-151 541.2 723 41.9
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 4.4e-146 522.7 655 44.0
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 9.1e-144 515.0 679 41.2
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 9.1e-144 515.0 667 40.9
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 8.0e-140 501.9 672 43.6
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 1.3e-137 494.6 577 45.6
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 2.8e-137 493.4 693 41.4
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 7.0e-128 462.2 529 47.8
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 2.3e-126 457.2 507 49.1
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 2.9e-126 456.8 765 37.3
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 1.5e-125 454.5 771 36.6
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 5.7e-122 442.6 639 39.1
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.1e-120 438.3 415 57.3
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.4e-120 438.0 756 38.0
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 4.1e-120 436.4 519 47.6
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 7.0e-120 435.6 518 47.9
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 7.8e-119 432.2 692 36.8
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 5.2e-115 419.5 483 49.5
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 1.3e-110 404.8 713 35.8
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.7e-97 361.3 493 43.8
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 1.6e-95 354.8 647 36.2
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 2.7e-95 354.0 379 48.3
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 1.2e-90 338.6 277 57.4
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 3.0e-86 323.9 256 59.0
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 2.6e-82 310.8 382 44.2
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 1.2e-74 285.4 213 60.6
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 4.3e-69 266.9 321 46.1
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 1.1e-64 252.3 283 45.2
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 2.9e-57 227.6 294 44.9
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 4.5e-50 203.8 294 39.8
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 5.9e-50 203.4 121 71.9
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 9.1e-27 126.3 103 61.2
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 1.0e-25 122.9 147 45.6
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.0e-22 112.8 163 44.2
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 4.0e-22 110.9 161 43.5
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 4.0e-22 110.9 129 45.7
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.5e-21 109.0 152 42.1
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 6.3e-20 103.6 132 45.5
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 2.7e-15 88.2 83 53.0
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 4.7e-15 87.4 75 57.3
MBI19_g17438_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 5.0e-09 67.4 60 53.3
RcHm_v2.0_Chr5g0028901 Rosa chinensis HOM05D005685 ORTHO05D007046 2.3e-06 58.5 41 63.4


User provided reference genes

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