Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 2.8e-55 218.4 110 100.0
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 1.7e-52 209.1 110 95.5
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 3.3e-48 194.9 110 90.9
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.6e-26 122.9 115 63.5
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 2.7e-26 122.1 110 61.8
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.9e-24 115.9 117 59.0
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.3e-20 103.2 113 53.1
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 3.6e-15 85.1 103 52.4
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 1.2e-13 80.1 105 42.9
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 2.0e-13 79.3 105 41.9
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.0e-13 79.3 102 47.1
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.6e-13 79.0 102 45.1
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 3.4e-13 78.6 107 43.0
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.4e-13 78.6 102 43.1
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 4.4e-13 78.2 101 42.6
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 2.9e-12 75.5 104 42.3
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 2.9e-12 75.5 101 43.6
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 2.9e-12 75.5 101 43.6
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 2.9e-12 75.5 101 43.6
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 3.8e-12 75.1 101 42.6
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 3.8e-12 75.1 101 42.6
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 4.9e-12 74.7 103 42.7
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 4.9e-12 74.7 104 42.3
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 4.9e-12 74.7 103 42.7
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 6.4e-12 74.3 105 41.0
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 8.4e-12 73.9 105 41.9
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 8.4e-12 73.9 107 42.1
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 1.1e-11 73.6 105 42.9
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 1.9e-11 72.8 105 41.0
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 1.9e-11 72.8 102 47.1
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 2.4e-11 72.4 101 42.6
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 2.4e-11 72.4 101 40.6
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 2.4e-11 72.4 106 40.6
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 2.4e-11 72.4 98 49.0
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 3.2e-11 72.0 100 45.0
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 4.2e-11 71.6 101 41.6
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 4.2e-11 71.6 101 40.6
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 4.2e-11 71.6 101 46.5
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 7.1e-11 70.9 99 44.4
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 9.3e-11 70.5 98 44.9
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 9.3e-11 70.5 100 44.0
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 9.3e-11 70.5 106 39.6
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 1.6e-10 69.7 97 48.5
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 2.1e-10 69.3 101 44.6
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 7.8e-10 67.4 106 39.6
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 7.8e-10 67.4 102 43.1
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 7.8e-10 67.4 98 43.9
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 7.8e-10 67.4 95 46.3
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.0e-09 67.0 109 45.0
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.3e-09 66.6 96 42.7
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.3e-09 66.6 99 47.5
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 1.3e-09 66.6 99 45.5
MBI10_g46499_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 1.3e-09 66.6 100 45.0
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 1.7e-09 66.2 98 44.9
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.7e-09 66.2 106 39.6
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 1.7e-09 66.2 106 43.4
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 2.3e-09 65.9 104 39.4
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 2.3e-09 65.9 128 40.6
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 2.3e-09 65.9 103 46.6
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 2.3e-09 65.9 95 44.2
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.3e-09 65.9 101 40.6
Solyc10g007580.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 3.0e-09 65.5 109 43.1
Sopen10g003500 Solanum pennellii HOM05D004022 ORTHO05D004090 3.0e-09 65.5 109 43.1
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 3.9e-09 65.1 111 40.5
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 3.9e-09 65.1 111 40.5
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 3.9e-09 65.1 101 42.6
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 3.9e-09 65.1 97 48.5
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 5.1e-09 64.7 101 45.5
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 5.1e-09 64.7 108 41.7
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 5.1e-09 64.7 97 48.5
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 5.1e-09 64.7 98 44.9
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 6.6e-09 64.3 105 46.7
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 6.6e-09 64.3 108 43.5
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 8.7e-09 63.9 114 36.0
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 8.7e-09 63.9 100 44.0
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 8.7e-09 63.9 106 43.4
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 8.7e-09 63.9 106 39.6
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.1e-08 63.5 111 40.5
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 1.1e-08 63.5 102 43.1
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 1.1e-08 63.5 111 42.3
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 1.1e-08 63.5 101 41.6
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.5e-08 63.2 101 40.6
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.5e-08 63.2 103 42.7
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 1.5e-08 63.2 102 41.2
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 1.9e-08 62.8 92 46.7
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.9e-08 62.8 96 39.6
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 1.9e-08 62.8 125 37.6
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 1.9e-08 62.8 96 46.9
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 2.5e-08 62.4 129 39.5
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 2.5e-08 62.4 95 46.3
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 3.3e-08 62.0 101 39.6
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.3e-08 62.0 101 44.6
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 4.3e-08 61.6 106 37.7
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 4.3e-08 61.6 116 37.1
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 4.3e-08 61.6 115 39.1
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 5.6e-08 61.2 103 38.8
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 5.6e-08 61.2 106 37.7
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 5.6e-08 61.2 104 38.5
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.6e-08 61.2 100 42.0
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 5.6e-08 61.2 100 42.0
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 5.6e-08 61.2 100 42.0
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 7.3e-08 60.8 105 43.8
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 7.3e-08 60.8 101 39.6
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 7.3e-08 60.8 115 35.7
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 7.3e-08 60.8 95 38.9
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 9.6e-08 60.5 101 39.6
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 9.6e-08 60.5 101 39.6
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 9.6e-08 60.5 105 42.9
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 1.3e-07 60.1 101 38.6
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 1.3e-07 60.1 101 38.6
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.3e-07 60.1 101 36.6
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 1.6e-07 59.7 101 37.6
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 1.6e-07 59.7 104 38.5
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.6e-07 59.7 95 40.0
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 2.1e-07 59.3 106 36.8
CAN.G262.11 Capsicum annuum HOM05D004022 ORTHO05D004090 2.1e-07 59.3 103 41.7
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 2.1e-07 59.3 100 41.0
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 2.1e-07 59.3 99 40.4
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 2.1e-07 59.3 97 41.2
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 2.8e-07 58.9 99 41.4
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.8e-07 58.9 117 41.0
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 2.8e-07 58.9 117 41.0
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 2.8e-07 58.9 36 75.0
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 3.6e-07 58.5 70 48.6
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 4.8e-07 58.2 99 39.4
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 6.2e-07 57.8 32 87.5
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 6.2e-07 57.8 32 87.5
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 6.2e-07 57.8 112 40.2
DCAR_013798 Daucus carota HOM05D057188 ORTHO05D004090 6.2e-07 57.8 93 45.2
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 6.2e-07 57.8 101 36.6
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 8.1e-07 57.4 100 38.0
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 1.4e-06 56.6 95 40.0
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 1.8e-06 56.2 95 46.3
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.4e-06 55.8 102 44.1
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 2.4e-06 55.8 31 87.1
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 3.1e-06 55.5 62 53.2
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 3.1e-06 55.5 99 37.4
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 3.1e-06 55.5 99 37.4
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 3.1e-06 55.5 47 66.0
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.1e-06 55.5 118 40.7
Rhsim13G0113700 Rhododendron simsii HOM05D004022 ORTHO05D004090 3.1e-06 55.5 93 44.1
Lalb_Chr19g0133591 Lupinus albus HOM05D004022 ORTHO05D004090 4.0e-06 55.1 31 83.9
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 5.3e-06 54.7 115 35.7
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 6.9e-06 54.3 34 73.5
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 6.9e-06 54.3 115 36.5
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 6.9e-06 54.3 99 39.4
Lalb_Chr13g0293851 Lupinus albus HOM05D012904 ORTHO05D004090 9.0e-06 53.9 109 37.6
TPR.G19691 Trifolium pratense HOM05D004022 ORTHO05D004090 9.0e-06 53.9 91 44.0


User provided reference genes

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