Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 1.3e-209 733.0 429 100.0
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 3.8e-201 704.9 422 96.9
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 2.1e-191 672.5 397 99.7
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 4.2e-176 621.7 432 88.2
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 4.1e-171 605.1 359 87.7
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 3.8e-161 572.0 423 73.0
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.1e-151 538.1 437 65.7
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 8.0e-151 537.7 428 66.1
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.8e-150 536.6 430 66.5
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.0e-146 523.1 428 64.7
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 7.7e-146 521.2 428 64.7
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 7.7e-146 521.2 361 73.7
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 1.0e-145 520.8 336 78.9
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 8.6e-145 517.7 426 64.6
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.1e-144 517.3 355 73.0
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.1e-144 517.3 437 64.1
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.9e-144 516.5 358 72.1
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.3e-144 515.8 437 63.8
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 3.0e-142 509.2 336 73.8
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 5.2e-142 508.4 423 62.2
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 6.8e-142 508.1 336 73.8
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 2.6e-141 506.1 341 73.9
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 2.6e-141 506.1 336 73.8
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 3.4e-141 505.8 423 62.6
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.4e-141 505.4 336 73.5
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 5.7e-141 505.0 426 62.0
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 7.5e-141 504.6 364 70.1
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 2.8e-140 502.7 433 61.7
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 6.3e-140 501.5 335 73.1
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 6.3e-140 501.5 429 60.6
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 8.3e-140 501.1 417 63.3
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 1.1e-139 500.7 340 72.4
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 1.4e-139 500.4 336 75.3
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 7.0e-139 498.0 420 60.7
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 1.2e-138 497.3 429 61.3
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.7e-138 496.1 404 64.6
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 6.6e-137 491.5 336 72.0
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.1e-136 490.7 337 71.5
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 1.5e-136 490.3 336 72.0
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 1.2e-135 487.3 434 59.4
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.6e-135 486.9 423 61.2
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 4.7e-135 485.3 431 60.3
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 1.0e-134 484.2 427 58.5
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.4e-134 483.8 424 59.9
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 1.8e-134 483.4 335 71.3
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 2.3e-134 483.0 427 58.5
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 2.3e-134 483.0 337 70.0
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 5.2e-134 481.9 424 60.6
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 5.8e-133 478.4 348 69.0
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 5.8e-133 478.4 340 70.0
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 9.8e-133 477.6 339 69.9
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 3.2e-131 472.6 345 68.7
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 3.5e-130 469.2 414 58.9
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 3.5e-130 469.2 430 58.4
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 7.8e-130 468.0 305 74.8
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 3.0e-129 466.1 364 65.4
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 8.6e-129 464.5 353 66.6
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 1.1e-128 464.2 328 70.1
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.1e-128 464.2 360 64.4
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 2.5e-128 463.0 438 56.2
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 7.3e-128 461.5 414 57.7
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 1.2e-127 460.7 356 67.7
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 6.2e-127 458.4 341 68.0
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 1.4e-126 457.2 421 56.3
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.8e-126 456.8 354 64.1
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 3.1e-126 456.1 438 63.7
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 1.2e-125 454.1 349 65.6
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.6e-125 453.0 344 68.0
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 5.8e-125 451.8 338 66.0
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.9e-124 449.5 355 67.9
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 5.4e-123 445.3 336 68.8
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 7.0e-123 444.9 381 60.6
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.6e-122 443.7 382 60.2
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 6.0e-122 441.8 352 64.5
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 6.0e-122 441.8 431 56.8
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 7.8e-122 441.4 341 67.2
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.0e-121 441.0 386 59.3
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 1.3e-121 440.7 338 65.4
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.7e-121 440.3 358 62.6
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 2.3e-121 439.9 299 71.6
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.0e-121 439.5 384 59.6
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 5.1e-121 438.7 347 64.3
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.1e-120 437.6 338 63.3
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.1e-120 437.6 327 68.2
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.5e-120 437.2 381 59.8
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.9e-120 436.8 355 62.0
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 9.5e-120 434.5 304 71.4
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 6.2e-119 431.8 427 53.9
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 1.8e-118 430.3 432 54.2
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 2.3e-118 429.9 426 54.2
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 4.0e-118 429.1 361 61.5
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 6.8e-118 428.3 402 57.0
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 3.4e-117 426.0 412 53.4
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.4e-117 425.6 385 57.9
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 5.8e-117 425.2 369 58.0
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 5.8e-117 425.2 367 60.2
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.7e-116 423.7 379 58.3
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 3.7e-116 422.5 358 59.8
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.1e-115 421.0 335 63.9
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-114 417.5 435 52.9
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-114 417.5 432 53.0
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.2e-114 417.5 432 53.0
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 1.2e-114 417.5 435 52.9
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 7.8e-114 414.8 325 64.3
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 2.3e-113 413.3 386 57.5
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.1e-112 411.0 466 51.5
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.5e-112 409.8 399 53.6
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 9.5e-112 407.9 340 60.3
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 2.1e-111 406.8 317 63.4
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 4.7e-111 405.6 281 71.2
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.2e-108 396.7 435 52.9
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 2.9e-108 396.4 341 57.2
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 6.4e-108 395.2 348 55.5
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 5.4e-107 392.1 345 58.6
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 2.7e-106 389.8 489 48.1
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 6.0e-106 388.7 347 55.3
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 3.0e-105 386.3 342 58.8
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 1.9e-104 383.6 342 58.5
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 5.6e-104 382.1 238 75.6
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 7.3e-104 381.7 413 50.1
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.6e-103 380.6 339 60.8
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 2.1e-103 380.2 314 63.4
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 2.8e-103 379.8 278 68.7
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 8.1e-103 378.3 469 47.5
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 1.1e-102 377.9 333 57.1
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 1.3e-100 370.9 250 73.2
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 1.4e-99 367.5 326 58.6
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 2.4e-99 366.7 299 59.2
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 4.2e-99 365.9 345 53.6
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 5.1e-97 359.0 344 55.2
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 7.3e-96 355.1 430 47.2
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 7.3e-96 355.1 347 53.3
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.2e-93 347.8 279 63.4
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 6.4e-92 342.0 260 67.3
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 4.2e-91 339.3 339 52.8
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 7.4e-88 328.6 343 49.3
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 8.4e-84 315.1 349 49.6
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 2.7e-82 310.1 331 51.4
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.8e-81 307.4 329 50.8
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 3.9e-81 306.2 330 49.7
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 1.5e-80 304.3 357 46.2
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 2.8e-79 300.1 360 46.9
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 2.2e-76 290.4 322 49.4
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 2.2e-76 290.4 322 49.4
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 4.6e-74 282.7 383 43.3
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 5.1e-73 279.3 333 45.9
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 2.5e-72 276.9 186 72.6
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 5.7e-72 275.8 309 48.9
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 4.1e-70 269.6 339 46.6
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 2.0e-64 250.8 272 52.6
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 3.1e-54 216.9 142 73.2
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 3.1e-54 216.9 142 73.2
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 3.8e-52 209.9 416 35.1
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 8.2e-47 192.2 153 61.4
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 4.1e-46 189.9 125 71.2
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 6.5e-44 182.6 200 49.0
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 2.4e-38 164.1 147 57.1
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 7.2e-35 152.5 94 77.7
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 2.3e-33 147.5 165 50.3
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.1e-27 128.6 133 52.6
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 8.9e-25 119.0 121 52.1
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 8.9e-25 119.0 99 57.6
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.5e-24 118.2 84 67.9
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 2.9e-23 114.0 114 48.2
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 5.4e-22 109.8 94 55.3
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 2.7e-21 107.5 94 56.4
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 2.7e-21 107.5 101 52.5
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 7.3e-19 99.4 278 30.2
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 6.8e-17 92.8 67 68.7
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 6.8e-17 92.8 96 56.2
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 9.5e-11 72.4 208 29.3
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 4.7e-10 70.1 49 65.3
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 1.4e-09 68.6 209 29.7
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 1.4e-09 68.6 94 40.4
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 2.3e-09 67.8 54 55.6
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 2.3e-09 67.8 54 55.6
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 3.1e-09 67.4 208 29.3
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 2.6e-08 64.3 39 76.9
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 3.4e-08 63.9 64 53.1
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 1.1e-06 58.9 168 32.1
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 9.2e-06 55.8 68 45.6


User provided reference genes

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