Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 2.2e-199 698.7 349 100.0
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 3.6e-194 681.4 342 99.4
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 1.5e-179 632.9 325 96.3
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 2.1e-178 629.0 349 88.3
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.4e-166 589.7 342 85.1
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 6.1e-157 557.8 318 86.2
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.5e-144 515.0 349 70.2
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.8e-138 495.0 335 75.2
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 7.2e-134 481.1 349 65.6
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 1.6e-133 479.9 340 67.1
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 1.3e-130 470.3 349 64.5
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 1.3e-130 470.3 349 64.2
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 5.4e-129 464.9 335 66.0
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 7.0e-129 464.5 349 62.2
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 2.0e-128 463.0 349 63.3
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 1.9e-126 456.4 347 61.4
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 9.5e-126 454.1 334 64.1
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 9.5e-126 454.1 349 61.3
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 4.7e-125 451.8 356 61.5
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 6.8e-124 448.0 349 61.0
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 4.4e-123 445.3 349 61.0
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 1.3e-122 443.7 347 60.8
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 2.8e-122 442.6 349 59.9
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 2.8e-122 442.6 348 61.2
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 4.9e-122 441.8 347 60.5
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 4.9e-122 441.8 339 61.9
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 4.9e-122 441.8 346 60.1
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 5.4e-121 438.3 341 61.0
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 1.6e-120 436.8 349 60.2
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 2.7e-120 436.0 347 62.2
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.7e-120 436.0 347 59.9
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 4.5e-120 435.3 349 61.9
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 1.0e-119 434.1 351 62.1
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 3.8e-119 432.2 340 59.4
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 3.8e-119 432.2 349 58.7
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.8e-119 432.2 347 59.7
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 5.0e-119 431.8 347 58.8
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 5.0e-119 431.8 288 69.8
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 6.6e-119 431.4 349 61.0
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 1.1e-118 430.6 351 61.0
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.2e-117 427.2 342 60.2
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 2.1e-117 426.4 340 59.4
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 2.8e-117 426.0 344 58.4
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 4.7e-117 425.2 346 59.2
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 6.1e-117 424.9 303 66.7
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 6.1e-117 424.9 342 59.6
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 6.1e-117 424.9 342 59.6
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 6.1e-117 424.9 347 57.6
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 8.0e-117 424.5 334 60.2
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 1.8e-116 423.3 344 58.4
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 2.3e-116 422.9 352 60.2
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 3.4e-115 419.1 328 58.2
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 1.7e-114 416.8 329 58.7
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 3.7e-114 415.6 333 59.8
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 1.1e-113 414.1 349 57.3
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 1.4e-113 413.7 349 56.7
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 2.4e-113 412.9 334 58.4
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 5.4e-113 411.8 345 56.5
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 5.4e-113 411.8 343 57.4
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 7.0e-113 411.4 351 55.8
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 2.0e-112 409.8 332 58.4
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.5e-112 409.1 280 66.1
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 5.9e-112 408.3 327 58.7
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 3.9e-111 405.6 349 57.9
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 3.9e-111 405.6 334 56.6
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 8.6e-111 404.4 340 57.4
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 1.1e-110 404.1 348 56.3
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 3.3e-110 402.5 342 56.1
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 4.3e-110 402.1 342 56.4
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 5.6e-110 401.7 364 54.9
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 5.6e-110 401.7 299 66.2
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 7.3e-110 401.4 297 61.6
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 1.0e-108 397.5 334 57.2
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 1.0e-108 397.5 350 54.9
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 4.0e-108 395.6 309 57.9
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 3.4e-107 392.5 351 55.0
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 5.8e-107 391.7 291 62.2
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 7.5e-107 391.3 309 57.3
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 3.0e-103 379.4 285 60.4
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 1.1e-102 377.5 341 54.5
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 3.3e-102 375.9 347 50.4
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 1.2e-101 374.0 350 53.7
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 1.2e-101 374.0 349 52.7
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 3.6e-101 372.5 289 59.9
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 4.7e-101 372.1 351 53.0
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 4.7e-101 372.1 351 51.6
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 3.1e-100 369.4 325 54.8
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 3.1e-100 369.4 327 53.2
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 8.9e-100 367.9 327 52.9
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 2.6e-99 366.3 351 50.4
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 1.3e-98 364.0 349 51.9
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 1.7e-98 363.6 349 52.1
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 1.1e-97 360.9 328 53.4
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 1.1e-97 360.9 328 53.4
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 1.9e-97 360.1 345 53.6
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 3.2e-97 359.4 330 52.1
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 4.1e-97 359.0 283 59.0
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 3.3e-94 349.4 352 49.4
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 9.5e-94 347.8 351 49.0
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 6.2e-93 345.1 220 73.2
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 3.1e-92 342.8 351 47.0
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.6e-91 339.7 339 51.9
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 3.4e-91 339.3 250 63.6
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 1.5e-86 323.9 325 49.2
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 3.6e-77 292.7 285 48.4
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 1.2e-75 287.7 296 48.6
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.0e-75 287.0 271 53.1
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.6e-75 286.6 334 42.5
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 5.8e-75 285.4 289 47.1
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 9.3e-73 278.1 301 44.9
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 4.0e-68 262.7 299 41.5
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 6.7e-63 245.4 310 39.7
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 2.1e-61 240.4 190 57.9
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 2.0e-59 233.8 309 41.4
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.8e-50 203.0 288 38.2
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.5e-50 202.2 292 36.6
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.9e-48 195.3 308 36.7
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.0e-47 193.4 154 57.1
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.1e-47 192.6 288 34.7
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.3e-46 189.9 316 35.8
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 9.7e-46 188.3 282 34.0
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-41 174.9 258 38.4
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-41 173.7 339 30.4
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.6e-40 171.0 284 32.7
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.6e-40 169.9 333 32.1
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.6e-40 169.9 314 32.2
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.0e-39 166.8 236 38.6
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.1e-39 166.0 338 32.5
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.7e-39 165.6 308 31.8
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-38 164.9 292 33.9
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.1e-38 164.9 295 33.9
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.8e-36 157.5 290 31.7
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.3e-36 156.0 306 30.7
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.1e-36 155.2 292 31.5
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.2e-33 145.6 292 30.8
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 6.7e-31 139.0 324 28.7
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.5e-27 126.3 270 29.3
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 5.5e-25 119.4 280 30.0
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-15 88.6 63 58.7
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 2.8e-13 80.5 156 32.1
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 3.1e-12 77.0 76 40.8
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 9.1e-12 75.5 47 66.0
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.2e-11 75.1 94 43.6


User provided reference genes

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