Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 0.0e+00 2223.7 1129 100.0
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 0.0e+00 2048.5 1134 92.4
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 0.0e+00 1825.4 991 94.8
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 0.0e+00 1489.2 1149 69.5
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 0.0e+00 1460.3 1131 69.8
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 0.0e+00 1459.9 1129 70.6
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 0.0e+00 1396.7 1113 68.8
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 0.0e+00 1300.0 1177 60.2
Sopen06g004440 Solanum pennellii HOM05D006994 ORTHO05D008229 0.0e+00 1280.0 927 75.2
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 0.0e+00 1168.3 1143 58.2
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 5.8e-124 449.9 1303 31.5
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 1.1e-122 445.7 1279 32.6
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 3.5e-105 387.5 1239 29.4
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 3.9e-88 330.9 1031 30.9
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 9.6e-87 326.2 1248 29.5
Solyc06g009803.1 Solanum lycopersicum HOM05D006994 ORTHO05D008229 4.5e-76 290.8 165 86.7
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 5.1e-72 277.3 1229 28.5
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 8.7e-72 276.6 1323 26.9
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 3.1e-69 268.1 1002 29.3
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 5.5e-66 257.3 1254 26.5
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 1.4e-64 252.7 1321 26.8
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 5.1e-64 250.8 1144 29.3
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 5.0e-59 234.2 1201 26.4
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 7.2e-58 230.3 799 28.5
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 2.3e-56 225.3 997 27.3
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 5.1e-56 224.2 1187 27.5
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 1.4e-53 216.1 875 27.0
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 1.4e-53 216.1 1301 24.1
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 3.5e-52 211.5 874 26.8
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 1.7e-51 209.1 1179 26.5
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 3.2e-50 204.9 1287 24.7
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 2.7e-49 201.8 1180 26.3
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 1.8e-48 199.1 1301 23.8
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 3.0e-48 198.4 1307 24.3
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 1.1e-47 196.4 1332 24.0
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.5e-47 196.1 1346 24.9
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 3.3e-47 194.9 1337 24.6
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 4.4e-47 194.5 1310 24.3
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 1.3e-46 193.0 778 27.2
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 8.2e-46 190.3 1109 24.6
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 2.6e-44 185.3 1317 23.8
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 2.9e-43 181.8 872 26.6
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.3e-38 166.4 1305 24.4
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 4.8e-38 164.5 1300 24.5
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 6.3e-38 164.1 1300 24.3
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 7.0e-37 160.6 865 25.5
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 1.6e-36 159.5 1112 25.0
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 2.9e-35 155.2 1184 23.6
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 2.9e-35 155.2 1298 23.0
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 2.1e-33 149.1 746 27.1
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 6.8e-32 144.1 1265 23.5
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 4.4e-31 141.4 1262 24.1
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 9.8e-31 140.2 1344 23.7
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 3.1e-29 135.2 1252 23.6
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 1.4e-24 119.8 1269 22.4
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 1.5e-23 116.3 315 35.9
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 2.2e-22 112.5 1323 21.8
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 6.3e-22 110.9 1207 21.6
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 8.3e-22 110.5 1278 22.9
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 8.3e-22 110.5 964 24.5
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 8.3e-22 110.5 841 23.7
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 1.1e-21 110.2 1270 23.8
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 4.1e-21 108.2 839 23.4
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 5.6e-18 97.8 1238 21.7
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 2.1e-17 95.9 1214 24.1
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 1.8e-16 92.8 130 43.8
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 2.3e-16 92.4 1234 22.7
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 4.0e-16 91.7 1143 22.7
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 2.6e-15 89.0 156 40.4
Oeu014262.1 Olea europaea HOM05D006994 ORTHO05D008229 1.7e-14 86.3 213 32.4
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 2.2e-14 85.9 175 36.6
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 6.4e-14 84.3 96 47.9
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 9.2e-13 80.5 701 22.3
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 1.2e-12 80.1 59 59.3
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 2.7e-12 79.0 146 37.0
AT3G58770 Arabidopsis thaliana HOM05D014107 ORTHO05D008229 3.5e-12 78.6 100 47.0
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 7.8e-12 77.4 904 22.1
Sp5g04070 Schrenkiella parvula HOM05D014107 ORTHO05D008229 1.3e-11 76.6 93 44.1
AL5G40540 Arabidopsis lyrata HOM05D014107 ORTHO05D008229 8.6e-11 73.9 100 44.0
CARHR169160 Cardamine hirsuta HOM05D014107 ORTHO05D008229 8.6e-11 73.9 107 40.2
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 1.9e-10 72.8 676 21.2
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 4.3e-10 71.6 55 54.5
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 4.3e-10 71.6 687 21.7
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 7.3e-10 70.9 863 23.3
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.6e-09 68.6 178 31.5
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 1.4e-08 66.6 780 22.4
Thhalv10005808m.g Eutrema salsugineum HOM05D014107 ORTHO05D008229 2.0e-07 62.8 184 31.0
BcaC07g40225 Brassica carinata HOM05D014107 ORTHO05D008229 2.6e-07 62.4 52 51.9
BcaC07g40294 Brassica carinata HOM05D014107 ORTHO05D003056 3.4e-07 62.0 86 41.9
C08p34100 Brassica napus HOM05D014107 ORTHO05D003056 3.4e-07 62.0 86 41.9
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 4.4e-07 61.6 781 22.2
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 1.3e-06 60.1 340 24.1
HPP92_005186 Vanilla planifolia HOM05D006994 ORTHO05D008229 1.3e-06 60.1 144 32.6
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 2.9e-06 58.9 54 46.3
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 3.7e-06 58.5 744 20.6
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 6.4e-06 57.8 52 48.1
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 8.3e-06 57.4 47 53.2


User provided reference genes

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