Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 1.3e-73 279.6 140 100.0
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 6.9e-27 124.4 62 100.0
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 6.9e-27 124.4 62 100.0
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 2.2e-25 119.4 62 95.2
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 6.4e-25 117.9 62 95.2
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 8.4e-25 117.5 62 93.5
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 1.9e-24 116.3 62 93.5
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 4.2e-24 115.2 62 91.9
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 3.9e-22 108.6 63 85.7
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 6.2e-20 101.3 64 81.2
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.3e-17 93.6 64 75.0
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 3.2e-16 89.0 67 68.7
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.2e-15 87.0 61 72.1
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.2e-15 87.0 61 72.1
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 1.2e-15 87.0 62 71.0
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 4.6e-15 85.1 67 65.7
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 4.6e-15 85.1 61 70.5
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 4.6e-15 85.1 61 70.5
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 6.0e-15 84.7 62 67.7
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 1.8e-14 83.2 62 69.4
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 2.3e-14 82.8 61 70.5
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 3.3e-13 79.0 61 65.6
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 5.7e-13 78.2 61 67.2
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 9.6e-13 77.4 60 63.3
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 1.6e-12 76.6 62 62.9
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 2.1e-12 76.3 61 60.7
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 2.1e-12 76.3 60 63.3
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.8e-12 75.9 60 63.3
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 4.8e-12 75.1 61 65.6
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 4.8e-12 75.1 61 60.7
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 1.4e-11 73.6 62 58.1
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.8e-11 73.2 62 58.1
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 2.4e-11 72.8 64 59.4
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 2.4e-11 72.8 61 62.3
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 3.1e-11 72.4 61 63.9
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 5.3e-11 71.6 61 60.7
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 6.9e-11 71.2 65 56.9
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 9.0e-11 70.9 60 63.3
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 9.0e-11 70.9 64 60.9
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 1.2e-10 70.5 61 62.3
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.2e-10 70.5 61 59.0
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 1.2e-10 70.5 60 61.7
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 1.5e-10 70.1 62 59.7
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 2.0e-10 69.7 62 58.1
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 2.6e-10 69.3 61 57.4
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 2.6e-10 69.3 60 56.7
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 3.4e-10 68.9 62 58.1
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.4e-10 68.9 60 61.7
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 5.9e-10 68.2 61 55.7
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 7.6e-10 67.8 61 55.7
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 7.6e-10 67.8 61 59.0
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.0e-09 67.4 61 55.7
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 2.2e-09 66.2 61 57.4
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 2.9e-09 65.9 61 54.1
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 6.5e-09 64.7 61 57.4
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 8.5e-09 64.3 60 56.7
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.1e-08 63.9 64 54.7
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.1e-08 63.9 62 54.8
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 4.2e-08 62.0 60 56.7
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 7.2e-08 61.2 60 61.7
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.2e-07 60.5 60 55.0
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 1.6e-07 60.1 62 54.8
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.6e-07 60.1 63 55.6
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.6e-07 60.1 63 55.6
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 3.6e-07 58.9 60 51.7
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 3.6e-07 58.9 61 57.4
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 3.6e-07 58.9 60 50.0
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 4.6e-07 58.5 62 53.2
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 6.1e-07 58.2 59 55.9
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 6.1e-07 58.2 60 51.7
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 7.9e-07 57.8 65 50.8
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 7.9e-07 57.8 62 50.0
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 1.0e-06 57.4 60 51.7
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 1.0e-06 57.4 60 51.7
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.0e-06 57.4 60 51.7
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.0e-06 57.4 60 51.7
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 1.0e-06 57.4 60 51.7
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 1.0e-06 57.4 62 50.0
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.3e-06 57.0 58 44.8
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.3e-06 56.2 60 50.0
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 3.0e-06 55.8 60 46.7
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 3.0e-06 55.8 60 50.0
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 8.7e-06 54.3 60 50.0
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 8.7e-06 54.3 60 50.0


User provided reference genes

Program Settings