Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 3.9e-157 558.1 294 100.0
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 1.1e-156 556.6 294 99.3
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 1.0e-120 437.2 327 75.5
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 3.8e-120 435.3 292 81.2
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 1.4e-114 416.8 227 93.8
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 5.4e-114 414.8 298 72.5
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 8.0e-110 401.0 299 71.2
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 1.8e-109 399.8 295 70.8
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 2.3e-109 399.4 293 72.4
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 3.0e-109 399.1 296 73.0
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 5.2e-109 398.3 298 69.1
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 6.8e-109 397.9 299 71.2
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 2.0e-108 396.4 300 71.3
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 2.6e-108 396.0 296 72.0
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 5.7e-108 394.8 300 71.0
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 7.5e-108 394.4 295 73.9
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.5e-108 394.4 293 71.7
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.5e-108 394.4 293 71.7
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 7.5e-108 394.4 295 71.9
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.3e-107 393.7 295 73.9
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 1.7e-107 393.3 297 70.4
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.7e-107 393.3 293 71.0
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 2.8e-107 392.5 297 69.0
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 2.8e-107 392.5 291 71.1
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 2.8e-107 392.5 297 69.7
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 3.7e-107 392.1 293 71.7
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 8.3e-107 391.0 293 71.7
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 8.3e-107 391.0 300 70.0
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 8.3e-107 391.0 299 68.6
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 1.1e-106 390.6 291 70.4
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 1.4e-106 390.2 291 70.4
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 1.4e-106 390.2 293 70.6
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 1.8e-106 389.8 300 70.0
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 1.8e-106 389.8 293 69.6
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 2.4e-106 389.4 300 69.7
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 2.4e-106 389.4 300 70.7
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 5.4e-106 388.3 297 71.0
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 5.4e-106 388.3 298 69.5
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 7.0e-106 387.9 298 65.8
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 7.0e-106 387.9 293 70.3
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 9.2e-106 387.5 297 71.4
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 9.2e-106 387.5 294 71.1
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.6e-105 386.7 295 68.1
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 1.6e-105 386.7 300 69.3
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 1.6e-105 386.7 293 68.9
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.0e-105 386.3 293 72.0
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 2.0e-105 386.3 289 69.9
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 2.7e-105 386.0 297 69.0
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 3.5e-105 385.6 294 69.7
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 4.5e-105 385.2 292 69.9
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 1.0e-104 384.0 298 69.5
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.0e-104 384.0 298 68.8
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 1.3e-104 383.6 297 70.0
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 1.3e-104 383.6 293 70.3
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.3e-104 383.6 300 70.0
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.7e-104 383.3 297 69.7
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.7e-104 383.3 297 68.0
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.7e-104 383.3 291 71.5
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 1.7e-104 383.3 288 71.2
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 2.3e-104 382.9 292 69.9
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 2.9e-104 382.5 296 69.9
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 2.9e-104 382.5 289 72.0
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 3.8e-104 382.1 290 68.6
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 5.0e-104 381.7 293 67.9
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 5.0e-104 381.7 293 67.9
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 8.6e-104 380.9 298 67.8
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.5e-103 380.2 289 72.7
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 1.5e-103 380.2 281 70.8
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 1.9e-103 379.8 299 69.9
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 2.5e-103 379.4 292 69.2
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.3e-103 379.0 300 69.3
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 5.6e-103 378.3 297 68.0
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 7.3e-103 377.9 289 72.0
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 9.5e-103 377.5 297 71.0
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 1.2e-102 377.1 293 67.6
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.2e-102 377.1 309 67.3
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 1.6e-102 376.7 295 68.8
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 2.8e-102 375.9 291 67.7
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 3.6e-102 375.6 296 70.3
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 4.7e-102 375.2 288 68.8
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 4.7e-102 375.2 298 65.1
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 8.0e-102 374.4 289 68.2
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 8.0e-102 374.4 282 70.2
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 1.0e-101 374.0 304 68.8
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 1.0e-101 374.0 294 69.7
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.4e-101 373.6 300 69.3
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 1.4e-101 373.6 286 69.6
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 1.8e-101 373.2 290 69.3
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 1.8e-101 373.2 290 69.3
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 2.3e-101 372.9 285 70.5
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 4.0e-101 372.1 285 69.5
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 1.2e-100 370.5 311 65.6
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 1.5e-100 370.2 289 67.8
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 1.5e-100 370.2 289 67.8
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 3.4e-100 369.0 289 67.8
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 7.5e-100 367.9 289 67.5
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 7.5e-100 367.9 294 68.4
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 1.3e-99 367.1 352 59.9
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 1.7e-99 366.7 291 67.0
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.2e-99 366.3 273 70.0
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.2e-99 366.3 273 70.0
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 2.9e-99 365.9 220 85.5
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 2.9e-99 365.9 265 73.6
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 4.9e-99 365.2 290 64.1
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 4.9e-99 365.2 286 69.9
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 1.1e-98 364.0 346 59.5
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.4e-98 363.6 301 64.8
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.4e-98 362.8 292 66.8
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 5.4e-98 361.7 355 59.4
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 5.4e-98 361.7 285 68.4
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 2.0e-97 359.8 322 62.1
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 2.7e-97 359.4 342 59.6
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 4.6e-97 358.6 283 67.5
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 4.6e-97 358.6 240 73.8
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 7.8e-97 357.8 287 66.6
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 1.3e-96 357.1 299 66.2
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 1.3e-96 357.1 333 62.5
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 1.3e-96 357.1 291 64.3
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 1.9e-95 353.2 295 65.8
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 6.2e-94 348.2 232 73.7
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 1.8e-93 346.7 292 65.4
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 6.8e-93 344.7 284 66.9
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 6.4e-91 338.2 288 64.6
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 5.4e-90 335.1 222 76.1
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 9.2e-90 334.3 268 67.5
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 1.5e-87 327.0 299 62.9
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.0e-85 318.9 293 62.5
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 2.6e-84 316.2 293 61.1
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 2.2e-83 313.2 231 71.9
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 9.2e-82 307.8 199 77.4
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 2.5e-79 299.7 232 63.4
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 4.7e-78 295.4 232 62.9
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 6.2e-78 295.0 290 57.9
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 1.3e-75 287.3 201 69.2
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.2e-75 286.6 231 69.7
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 1.1e-74 284.3 232 65.9
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 1.6e-73 280.4 187 76.5
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 2.7e-73 279.6 263 56.3
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 2.7e-73 279.6 261 60.2
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 4.6e-73 278.9 260 59.2
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 1.3e-62 244.2 196 63.8
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.4e-61 240.7 186 68.3
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.5e-60 237.3 224 53.6
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 6.0e-57 225.3 235 51.5
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 2.1e-49 200.3 212 50.0
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.9e-47 193.7 181 58.0
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 8.1e-46 188.3 150 62.7
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 5.1e-40 169.1 210 45.2
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.8e-37 160.6 193 49.7
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 1.1e-21 108.2 70 77.1
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 6.9e-21 105.5 59 88.1
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 2.2e-19 100.5 64 81.2
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 1.4e-16 91.3 153 41.8
Nitab4.5_0001019g0110 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.7e-14 84.3 70 75.7
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 1.1e-13 81.6 121 44.6
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 2.2e-11 73.9 55 63.6
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 1.2e-09 68.2 47 74.5


User provided reference genes

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