Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 4.4e-49 197.6 97 100.0
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 4.4e-49 197.6 97 100.0
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 1.9e-47 192.2 97 96.9
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 3.3e-36 154.8 98 78.6
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.4e-34 149.4 98 75.5
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.1e-31 139.8 100 67.0
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 5.1e-29 131.0 104 59.6
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 7.4e-28 127.1 98 64.3
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 9.6e-28 126.7 93 65.6
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 1.3e-27 126.3 89 70.8
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 2.1e-27 125.6 98 63.3
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 6.2e-27 124.0 97 64.9
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.1e-26 123.2 99 60.6
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 1.1e-26 123.2 97 63.9
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.6e-25 118.6 100 64.0
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 4.5e-25 117.9 97 62.9
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 2.2e-24 115.5 97 60.8
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.1e-23 113.2 101 61.4
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.1e-23 113.2 97 62.9
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.4e-23 112.8 101 61.4
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.4e-23 112.1 103 59.2
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.2e-23 111.7 104 58.7
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 3.2e-23 111.7 94 57.4
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 5.5e-23 110.9 97 55.7
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 3.5e-22 108.2 94 52.1
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 6.0e-22 107.5 94 55.3
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 1.3e-21 106.3 94 52.1
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 5.1e-21 104.4 94 50.0
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 5.1e-21 104.4 97 50.5
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.1e-20 103.2 97 55.7
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 1.5e-20 102.8 99 50.5
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.9e-20 102.4 98 54.1
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 1.3e-19 99.8 92 55.4
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 1.6e-19 99.4 94 53.2
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 1.6e-19 99.4 98 54.1
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 2.8e-19 98.6 94 50.0
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 2.8e-19 98.6 95 50.5
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 6.2e-19 97.4 94 51.1
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 1.8e-18 95.9 95 50.5
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 1.2e-17 93.2 86 53.5
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 2.0e-17 92.4 94 50.0
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 2.6e-17 92.0 95 47.4
ECA246G0551 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.0e-16 90.1 85 58.8
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 1.0e-16 90.1 98 53.1
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 1.0e-16 90.1 98 53.1
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 1.3e-16 89.7 95 48.4
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 1.7e-16 89.4 94 47.9
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 2.2e-16 89.0 97 50.5
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 6.5e-16 87.4 94 47.9
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.1e-15 86.7 94 50.0
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 1.1e-15 86.7 94 46.8
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 1.1e-15 86.7 95 47.4
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 1.4e-15 86.3 86 46.5
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.4e-15 86.3 97 49.5
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 1.4e-15 86.3 97 44.3
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 1.9e-15 85.9 94 46.8
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 3.2e-15 85.1 98 52.0
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 5.5e-15 84.3 94 44.7
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 5.5e-15 84.3 94 45.7
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 1.2e-14 83.2 94 44.7
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 1.2e-14 83.2 94 44.7
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 1.2e-14 83.2 95 53.7
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 1.6e-14 82.8 94 42.6
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 2.1e-14 82.4 97 46.4
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 2.7e-14 82.0 94 46.8
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 2.7e-14 82.0 94 44.7
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 3.5e-14 81.6 93 45.2
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 4.6e-14 81.3 96 47.9
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.0e-13 80.1 93 47.3
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 1.3e-13 79.7 95 42.1
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 1.8e-13 79.3 97 48.5
ECA246G0483 Erigeron canadensis HOM05D004838 ORTHO05D005373 2.3e-13 79.0 89 48.3
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 2.3e-13 79.0 94 50.0
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 2.3e-13 79.0 94 50.0
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 2.3e-13 79.0 94 50.0
ECA246G2857 Erigeron canadensis HOM05D004838 ORTHO05D005373 6.7e-13 77.4 98 49.0
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 6.7e-13 77.4 95 47.4
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 8.7e-13 77.0 79 51.9
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.1e-12 76.6 95 46.3
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 1.5e-12 76.3 94 42.6
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 1.5e-12 76.3 94 41.5
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 2.5e-12 75.5 94 43.6
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.3e-12 75.1 95 46.3
ECA246G1879 Erigeron canadensis HOM05D000214 ORTHO05D000131 4.3e-12 74.7 87 52.9
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 4.3e-12 74.7 94 41.5
Lsat_1_v5_gn_3_40020 Lactuca sativa HOM05D004838 ORTHO05D005373 9.7e-12 73.6 81 48.1
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 9.7e-12 73.6 86 47.7
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 2.2e-11 72.4 98 41.8
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 2.8e-11 72.0 97 44.3
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 3.7e-11 71.6 97 44.3
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 6.3e-11 70.9 97 43.3
Lsat_1_v5_gn_3_40361 Lactuca sativa HOM05D004838 ORTHO05D005373 6.3e-11 70.9 97 43.3
Nitab4.5_0005244g0070 Nicotiana tabacum HOM05D004838 ORTHO05D005373 8.2e-11 70.5 89 47.2
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 1.1e-10 70.1 97 47.4
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 3.1e-10 68.6 98 40.8
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 3.1e-10 68.6 98 40.8
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 3.1e-10 68.6 98 42.9
Sabra13G0119300 Salix brachista HOM05D004838 ORTHO05D005373 4.1e-10 68.2 92 47.8
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 5.3e-10 67.8 97 46.4
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 6.9e-10 67.4 97 39.2
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 1.2e-09 66.6 97 37.1
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 1.2e-09 66.6 97 37.1
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 1.2e-09 66.6 97 37.1
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 1.2e-09 66.6 97 37.1
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 1.2e-09 66.6 97 37.1
Solyc12g005600.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 1.2e-09 66.6 99 41.4
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 1.5e-09 66.2 94 35.1
Nitab4.5_0011184g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 2.6e-09 65.5 92 44.6
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 4.5e-09 64.7 97 39.2
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 5.9e-09 64.3 98 38.8
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 7.6e-09 63.9 95 47.4
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 7.6e-09 63.9 97 37.1
unitig_27.g24815 Utricularia gibba HOM05D004838 ORTHO05D005373 7.6e-09 63.9 97 42.3
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 1.0e-08 63.5 98 39.8
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 1.0e-08 63.5 98 39.8
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 1.3e-08 63.2 93 35.5
CAN.G980.5 Capsicum annuum HOM05D004838 ORTHO05D005373 1.3e-08 63.2 89 48.3
ECA246G1803 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.3e-08 63.2 95 43.2
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 1.7e-08 62.8 93 37.6
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 1.7e-08 62.8 93 37.6
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 2.2e-08 62.4 97 38.1
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 2.9e-08 62.0 97 36.1
unitig_699.g19386 Utricularia gibba HOM05D004838 ORTHO05D005373 2.9e-08 62.0 96 41.7
HPP92_001805 Vanilla planifolia HOM05D004838 ORTHO05D005373 3.8e-08 61.6 98 40.8
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 8.5e-08 60.5 97 36.1
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 8.5e-08 60.5 97 36.1
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 1.1e-07 60.1 89 41.6
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 2.5e-07 58.9 100 38.0
QL05p081093 Quercus lobata HOM05D004838 ORTHO05D005373 3.2e-07 58.5 96 33.3
Sc21g0002480 Simmondsia chinensis HOM05D004838 ORTHO05D005373 3.2e-07 58.5 95 41.1
Haze_06585 Corylus avellana HOM05D004838 ORTHO05D005373 4.2e-07 58.2 101 36.6
MBI02_g37326_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 4.2e-07 58.2 110 36.4
Thecc.02G170800 Theobroma cacao HOM05D000831 ORTHO05D000660 5.5e-07 57.8 98 36.7
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 7.2e-07 57.4 102 37.3
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 7.2e-07 57.4 94 41.5
Lsat_1_v5_gn_3_40521 Lactuca sativa HOM05D000831 ORTHO05D000660 1.2e-06 56.6 99 37.4
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 1.2e-06 56.6 94 31.9
Sc21g0002530 Simmondsia chinensis HOM05D004838 ORTHO05D005373 1.6e-06 56.2 92 41.3
Migut.H01018 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.7e-06 55.5 91 39.6
Gohir.D05G169000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.6e-06 55.1 97 35.1
Gorai.009G174200 Gossypium raimondii HOM05D004838 ORTHO05D005373 4.6e-06 54.7 97 33.0
MBI02_g37327_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 4.6e-06 54.7 99 39.4
Rhsim06G0152500 Rhododendron simsii HOM05D000831 ORTHO05D000660 4.6e-06 54.7 99 34.3
Sc21g0002490 Simmondsia chinensis HOM05D004838 ORTHO05D005373 4.6e-06 54.7 95 38.9
Hma1.2p1_0565F.1_g179640 Hydrangea macrophylla HOM05D000831 ORTHO05D000660 6.1e-06 54.3 110 37.3
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 7.9e-06 53.9 89 42.7
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 7.9e-06 53.9 94 31.9
Sc21g0002500 Simmondsia chinensis HOM05D004838 ORTHO05D005373 7.9e-06 53.9 93 37.6
SGA_v2.0_scaffold159G37622 Striga asiatica HOM05D004838 ORTHO05D402889 7.9e-06 53.9 80 41.2


User provided reference genes

Program Settings